Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 9.4e-232 806.6 435 100.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.4e-126 457.2 445 60.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.2e-123 446.0 442 61.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.1e-121 438.7 434 59.4
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-120 436.4 443 63.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.3e-119 434.1 441 57.8
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.8e-118 430.3 440 61.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.2e-117 427.6 436 58.3
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.0e-117 426.8 446 59.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 3.4e-117 426.0 441 55.6
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 7.7e-117 424.9 441 61.7
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.3e-116 424.1 438 56.6
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.6e-114 417.2 441 61.7
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.6e-114 415.6 446 60.8
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.6e-114 415.6 436 56.4
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.9e-114 414.8 440 58.4
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.0e-113 414.5 446 60.5
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.4e-113 414.1 447 55.5
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.8e-113 413.7 441 55.8
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.8e-113 413.7 437 56.3
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.8e-113 413.7 443 56.7
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.3e-113 413.3 446 60.8
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 3.9e-113 412.5 469 53.9
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.9e-113 412.5 444 56.1
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 3.9e-113 412.5 443 60.3
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 6.7e-113 411.8 452 60.0
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 6.7e-113 411.8 439 54.4
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 8.8e-113 411.4 434 54.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-112 411.0 435 55.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.5e-112 410.6 437 55.4
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.0e-112 410.2 463 54.4
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.0e-112 410.2 439 54.0
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.5e-112 409.8 448 56.5
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.5e-112 409.8 438 55.7
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.5e-112 409.8 441 59.6
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.3e-112 409.5 449 55.7
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 4.3e-112 409.1 440 60.7
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.7e-112 408.7 496 52.2
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.7e-112 408.7 434 56.5
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 7.4e-112 408.3 433 56.4
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 9.7e-112 407.9 436 55.0
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.7e-112 407.9 436 55.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 9.7e-112 407.9 441 55.1
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 9.7e-112 407.9 449 54.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.7e-112 407.9 441 59.6
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.7e-112 407.9 441 59.6
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.7e-111 407.1 436 55.0
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.7e-111 407.1 454 59.7
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.2e-111 406.8 442 55.9
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.8e-111 406.4 435 60.5
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 3.7e-111 406.0 455 53.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.7e-111 406.0 436 54.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 3.7e-111 406.0 437 61.8
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.8e-111 405.6 436 55.0
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.3e-111 405.2 436 55.0
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.4e-110 404.1 448 53.6
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.4e-110 404.1 441 54.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.4e-110 404.1 436 55.3
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.4e-110 404.1 444 61.3
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.4e-110 404.1 437 55.8
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.8e-110 403.7 441 54.0
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.4e-110 403.3 453 53.0
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.1e-110 402.9 434 59.7
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 9.1e-110 401.4 434 57.1
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 9.1e-110 401.4 445 55.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-109 401.0 447 59.5
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.2e-109 401.0 457 58.4
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.5e-109 400.6 448 54.9
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.0e-109 400.2 433 61.2
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.0e-109 400.2 441 56.0
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.0e-109 400.2 440 55.9
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.4e-109 399.4 441 59.4
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.4e-109 399.4 457 51.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 4.5e-109 399.1 442 54.5
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.9e-109 398.7 431 59.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 5.9e-109 398.7 440 53.2
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.7e-108 397.1 433 60.3
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.7e-108 397.1 434 54.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 6.5e-108 395.2 448 55.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.5e-108 395.2 432 58.6
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.1e-107 394.4 473 50.5
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.1e-107 394.4 451 57.6
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.4e-107 394.0 449 53.5
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.4e-107 394.0 434 57.1
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.5e-107 393.3 436 52.8
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.2e-107 392.9 438 53.2
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 5.5e-107 392.1 483 48.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 9.4e-107 391.3 437 56.5
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 1.6e-106 390.6 446 52.9
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 3.6e-106 389.4 434 60.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 4.7e-106 389.0 442 54.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 7.9e-106 388.3 442 53.6
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.4e-105 387.5 448 52.7
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.4e-105 387.5 435 54.5
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 3.9e-105 386.0 438 54.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 5.1e-105 385.6 440 59.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 6.7e-105 385.2 447 59.1
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.6e-104 383.3 491 50.1
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 3.3e-104 382.9 453 57.6
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.3e-104 382.9 443 54.6
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.1e-102 377.9 454 51.1
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 4.5e-101 372.5 452 50.7
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 5.9e-101 372.1 454 51.1
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-100 370.9 452 50.4
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 2.9e-100 369.8 460 55.0
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.0e-100 369.0 437 59.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 6.5e-100 368.6 472 49.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.9e-99 367.1 450 50.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 4.2e-99 365.9 431 55.7
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.3e-94 349.0 296 62.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.9e-92 343.2 424 54.2
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.0e-90 335.1 360 54.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 4.0e-89 332.8 308 67.2
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.4e-86 322.4 472 50.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 5.4e-86 322.4 440 46.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.0e-84 318.2 373 50.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 2.7e-82 310.1 441 49.9
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 6.3e-79 298.9 393 55.7
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 9.1e-78 295.0 394 49.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.9e-77 292.4 379 53.8
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.3e-71 274.6 436 45.4
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.7e-52 211.1 119 82.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.3e-51 206.8 294 48.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.1e-49 200.3 123 78.9
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 7.1e-46 189.1 285 46.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.6e-45 188.0 267 44.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.6e-45 188.0 267 44.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.1e-45 187.6 339 38.1
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 2.1e-45 187.6 217 56.2
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-44 184.9 430 37.9
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.5e-43 181.4 430 37.7
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.3e-38 162.2 353 37.1
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.3e-36 157.5 283 41.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.1e-34 151.0 261 42.1
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.4e-31 139.4 191 48.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.7e-28 131.3 78 80.8
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.3e-28 131.0 121 53.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.0e-24 117.9 65 81.5
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 5.8e-24 116.3 60 90.0
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-23 115.2 69 78.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.4e-23 112.8 63 84.1
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.6e-21 108.2 182 40.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.7e-21 107.5 116 48.3
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 6.0e-21 106.3 68 73.5
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.8e-20 104.8 59 78.0
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.5e-19 101.7 68 70.6
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-19 101.7 68 70.6
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 2.1e-13 81.3 440 23.6
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.3e-12 78.6 62 67.7
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.3e-11 73.6 127 43.3
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 8.4e-07 59.3 95 46.3
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 2.5e-06 57.8 59 45.8
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-06 57.4 68 44.1


User provided reference genes

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