Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G094 Amborella trichopoda HOM05D003310 ORTHO05D003911 2.5e-62 241.9 118 100.0
ATR0561G028 Amborella trichopoda HOM05D003310 ORTHO05D003911 1.6e-29 132.9 67 97.0
CDE05G2640 Ceratophyllum demersum HOM05D003310 ORTHO05D003911 1.2e-24 116.7 67 82.1
MBI18_g03876_MAGBIO Magnolia biondii HOM05D003310 ORTHO05D003911 6.0e-24 114.4 67 79.1
TAR636G1686 Trochodendron aralioides HOM05D003310 ORTHO05D003911 1.3e-23 113.2 67 82.1
Nn2g14304 Nelumbo nucifera HOM05D003310 ORTHO05D003911 3.9e-23 111.7 67 79.1
Oeu052184.1 Olea europaea HOM05D001160 ORTHO05D001092 3.9e-23 111.7 87 64.4
Dinv41402 Davidia involucrata HOM05D003310 ORTHO05D003911 5.1e-23 111.3 87 64.4
Nn2g14309 Nelumbo nucifera HOM05D003310 ORTHO05D003911 5.1e-23 111.3 76 72.4
Actinidia04282 Actinidia chinensis HOM05D003310 ORTHO05D003911 6.6e-23 110.9 67 74.6
Actinidia38342 Actinidia chinensis HOM05D003310 ORTHO05D003911 8.7e-23 110.5 67 74.6
Potri.006G187700 Populus trichocarpa HOM05D003310 ORTHO05D003911 1.1e-22 110.2 87 64.4
CANSAT11G1948 Cannabis sativa HOM05D003310 ORTHO05D003911 1.5e-22 109.8 87 64.4
Nitab4.5_0001094g0120 Nicotiana tabacum HOM05D003310 ORTHO05D003911 1.5e-22 109.8 87 63.2
Peaxi162Scf00347g00622 Petunia axillaris HOM05D003310 ORTHO05D003911 1.5e-22 109.8 87 59.8
TAR625G1383 Trochodendron aralioides HOM05D003310 ORTHO05D003911 1.5e-22 109.8 67 77.6
Dinv42887 Davidia involucrata HOM05D003310 ORTHO05D003911 2.5e-22 109.0 87 64.4
Dinv43213 Davidia involucrata HOM05D003310 ORTHO05D003911 2.5e-22 109.0 87 64.4
Lsat_1_v5_gn_3_121981 Lactuca sativa HOM05D003310 ORTHO05D003911 3.3e-22 108.6 87 60.9
Solyc07g005200.3 Solanum lycopersicum HOM05D003310 ORTHO05D003911 3.3e-22 108.6 87 62.1
Sopen07g001570 Solanum pennellii HOM05D003310 ORTHO05D003911 3.3e-22 108.6 87 62.1
PGSC0003DMG400003194 Solanum tuberosum HOM05D003310 ORTHO05D003911 3.3e-22 108.6 87 62.1
TAR383G0058 Trochodendron aralioides HOM05D003310 ORTHO05D003911 3.3e-22 108.6 87 63.2
Hma1.2p1_0222F.1_g093280 Hydrangea macrophylla HOM05D003310 ORTHO05D003911 4.3e-22 108.2 87 62.1
TWI34G0086 Tripterygium wilfordii HOM05D003310 ORTHO05D003911 4.3e-22 108.2 87 62.1
TWI63G1800 Tripterygium wilfordii HOM05D003310 ORTHO05D003911 4.3e-22 108.2 87 62.1
CiPaw.16G115200 Carya illinoinensis HOM05D003310 ORTHO05D003911 5.6e-22 107.8 87 63.2
HanXRQChr03g0092001 Helianthus annuus HOM05D003310 ORTHO05D003911 5.6e-22 107.8 87 59.8
Sabra06G0143500 Salix brachista HOM05D003310 ORTHO05D003911 5.6e-22 107.8 87 63.2
ClCG06G012230 Citrullus lanatus HOM05D003310 ORTHO05D003911 7.3e-22 107.5 87 63.2
MELO3C010243.2 Cucumis melo HOM05D003310 ORTHO05D003911 7.3e-22 107.5 87 63.2
Manes.06G039400 Manihot esculenta HOM05D003310 ORTHO05D003911 7.3e-22 107.5 67 76.1
Nitab4.5_0005407g0030 Nicotiana tabacum HOM05D003310 ORTHO05D003911 7.3e-22 107.5 87 62.1
Actinidia23542 Actinidia chinensis HOM05D003310 ORTHO05D003911 9.6e-22 107.1 67 74.6
COL.COLO4_18772 Corchorus olitorius HOM05D003310 ORTHO05D003911 9.6e-22 107.1 67 74.6
Migut.K00345 Erythranthe guttata HOM05D003310 ORTHO05D003911 9.6e-22 107.1 87 60.9
Eucgr.C04043 Eucalyptus grandis HOM05D003310 ORTHO05D003911 9.6e-22 107.1 87 59.8
RcHm_v2.0_Chr2g0086021 Rosa chinensis HOM05D003310 ORTHO05D003911 9.6e-22 107.1 87 62.1
Sed0010420 Sechium edule HOM05D003310 ORTHO05D003911 9.6e-22 107.1 67 76.1
arahy.Tifrunner.gnm1.ann1.F2WDYD Arachis hypogaea HOM05D003310 ORTHO05D003911 1.3e-21 106.7 67 76.1
CSS0017962 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 1.3e-21 106.7 67 74.6
Ciclev10009544m.g Citrus clementina HOM05D003310 ORTHO05D003911 1.6e-21 106.3 87 62.1
Duzib187G0039 Durio zibethinus HOM05D003310 ORTHO05D003911 1.6e-21 106.3 87 62.1
Gohir.A05G051300 Gossypium hirsutum HOM05D003310 ORTHO05D003911 1.6e-21 106.3 87 60.9
Gohir.D05G052800 Gossypium hirsutum HOM05D003310 ORTHO05D003911 1.6e-21 106.3 87 60.9
PGR142G2272 Punica granatum HOM05D003310 ORTHO05D003911 1.6e-21 106.3 87 62.1
Rhsim03G0256000 Rhododendron simsii HOM05D003310 ORTHO05D003911 1.6e-21 106.3 67 71.6
Glyma.13G136600 Glycine max HOM05D003310 ORTHO05D003911 2.1e-21 105.9 87 62.1
vmacro13040 Vaccinium macrocarpon HOM05D003310 ORTHO05D003911 2.1e-21 105.9 67 73.1
Cpa.g.sc46.121 Carica papaya HOM05D003310 ORTHO05D003911 2.8e-21 105.5 67 73.1
Glyma.09G097700 Glycine max HOM05D003310 ORTHO05D003911 3.6e-21 105.1 87 62.1
MD02G1010400 Malus domestica HOM05D003310 ORTHO05D003911 3.6e-21 105.1 87 60.9
Manes.14G141300 Manihot esculenta HOM05D003310 ORTHO05D003911 3.6e-21 105.1 67 71.6
CAN.G520.20 Capsicum annuum HOM05D003310 ORTHO05D003911 4.8e-21 104.8 91 59.3
Eucgr.C00369 Eucalyptus grandis HOM05D003310 ORTHO05D003911 4.8e-21 104.8 67 73.1
Gorai.009G054600 Gossypium raimondii HOM05D003310 ORTHO05D003911 4.8e-21 104.8 87 59.8
Lj9A713T34 Lonicera japonica HOM05D003310 ORTHO05D003911 4.8e-21 104.8 87 59.8
Phvul.004G108500 Phaseolus vulgaris HOM05D003310 ORTHO05D003911 4.8e-21 104.8 87 62.1
Potri.018G110700 Populus trichocarpa HOM05D003310 ORTHO05D003911 4.8e-21 104.8 87 62.1
VMungo0464G0291 Vigna mungo HOM05D003310 ORTHO05D003911 4.8e-21 104.8 87 62.1
GSVIVG01003730001 Vitis vinifera HOM05D003310 ORTHO05D003911 4.8e-21 104.8 87 60.9
CiPaw.15G173700 Carya illinoinensis HOM05D003310 ORTHO05D003911 6.2e-21 104.4 87 60.9
CsaV3_1G028720 Cucumis sativus L. HOM05D003310 ORTHO05D003911 6.2e-21 104.4 87 62.1
Thecc.09G034100 Theobroma cacao HOM05D003310 ORTHO05D003911 6.2e-21 104.4 67 73.1
Lsat_1_v5_gn_7_48340 Lactuca sativa HOM05D003310 ORTHO05D003911 8.1e-21 104.0 68 72.1
FAN23G1365 Fragaria x ananassa HOM05D003310 ORTHO05D003911 1.1e-20 103.6 87 59.8
FAN28G2727 Fragaria x ananassa HOM05D003310 ORTHO05D003911 1.1e-20 103.6 87 59.8
Oeu028815.1 Olea europaea HOM05D003310 ORTHO05D003911 1.1e-20 103.6 87 60.9
AagrBONN_evm.TU.Sc2ySwM_344.4184 Anthoceros agrestis HOM05D003310 ORTHO05D003911 1.4e-20 103.2 67 70.1
Cc06_g15310 Coffea canephora HOM05D003310 ORTHO05D003911 1.4e-20 103.2 87 57.5
Eucgr.L00628 Eucalyptus grandis HOM05D003310 ORTHO05D003911 1.4e-20 103.2 88 59.1
Gorai.004G291400 Gossypium raimondii HOM05D003310 ORTHO05D003911 1.4e-20 103.2 87 59.8
Hma1.2p1_0028F.1_g017350 Hydrangea macrophylla HOM05D003310 ORTHO05D003911 1.4e-20 103.2 65 76.9
Prupe.7G259700 Prunus persica HOM05D003310 ORTHO05D003911 1.4e-20 103.2 87 60.9
SGA_v2.0_scaffold387G50513 Striga asiatica HOM05D003310 ORTHO05D003911 1.4e-20 103.2 87 59.8
THA.LOC104813543 Tarenaya hassleriana HOM05D003310 ORTHO05D003911 1.4e-20 103.2 67 73.1
QL02p092524 Quercus lobata HOM05D003310 ORTHO05D003911 1.8e-20 102.8 87 60.9
HPP92_016148 Vanilla planifolia HOM05D003310 ORTHO05D003911 1.8e-20 102.8 73 71.2
Carub.0008s1861 Capsella rubella HOM05D003310 ORTHO05D003911 2.4e-20 102.4 67 71.6
CARHR271870 Cardamine hirsuta HOM05D003310 ORTHO05D003911 2.4e-20 102.4 67 71.6
FvH4_1g01250 Fragaria vesca HOM05D003310 ORTHO05D003911 2.4e-20 102.4 87 59.8
FAN19G2646 Fragaria x ananassa HOM05D003310 ORTHO05D003911 2.4e-20 102.4 87 59.8
GSVIVG01031355001 Vitis vinifera HOM05D003310 ORTHO05D003911 2.4e-20 102.4 67 74.6
CSS0029907 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 3.1e-20 102.1 67 70.1
Cpa.g.sc43.124 Carica papaya HOM05D003310 ORTHO05D003911 3.1e-20 102.1 67 73.1
Thhalv10014720m.g Eutrema salsugineum HOM05D003310 ORTHO05D003911 3.1e-20 102.1 67 71.6
Gohir.A08G251500 Gossypium hirsutum HOM05D003310 ORTHO05D003911 3.1e-20 102.1 87 58.6
HanXRQChr09g0243541 Helianthus annuus HOM05D003310 ORTHO05D003911 3.1e-20 102.1 68 70.6
MD15G1155400 Malus domestica HOM05D003310 ORTHO05D003911 3.1e-20 102.1 67 71.6
PGR102G2532 Punica granatum HOM05D003310 ORTHO05D003911 3.1e-20 102.1 87 59.8
AL8G34160 Arabidopsis lyrata HOM05D003310 ORTHO05D003911 4.0e-20 101.7 67 71.6
MSTRG.10628 Avicennia marina HOM05D003310 ORTHO05D003911 4.0e-20 101.7 87 59.8
Gohir.D08G273000 Gossypium hirsutum HOM05D003310 ORTHO05D003911 4.0e-20 101.7 87 58.6
Lj6g0015999 Lotus japonicus HOM05D003310 ORTHO05D003911 4.0e-20 101.7 87 60.9
Lalb_Chr19g0125201 Lupinus albus HOM05D003310 ORTHO05D003911 4.0e-20 101.7 67 68.7
THA.LOC104817832 Tarenaya hassleriana HOM05D003310 ORTHO05D003911 4.0e-20 101.7 87 58.6
AT5G58060 Arabidopsis thaliana HOM05D003310 ORTHO05D003911 5.3e-20 101.3 67 70.1
arahy.Tifrunner.gnm1.ann1.6C44PS Arachis hypogaea HOM05D003310 ORTHO05D003911 5.3e-20 101.3 90 56.7
DCAR_017901 Daucus carota HOM05D003310 ORTHO05D003911 5.3e-20 101.3 87 58.6
Gohir.A07G026100 Gossypium hirsutum HOM05D003310 ORTHO05D003911 5.3e-20 101.3 87 57.5
SGA_v2.0_scaffold206G41821 Striga asiatica HOM05D003310 ORTHO05D003911 5.3e-20 101.3 87 58.6
Gohir.D07G030000 Gossypium hirsutum HOM05D003310 ORTHO05D003911 6.9e-20 100.9 87 57.5
Gorai.001G031200 Gossypium raimondii HOM05D003310 ORTHO05D003911 6.9e-20 100.9 87 57.5
Oeu043494.2 Olea europaea HOM05D003310 ORTHO05D003911 6.9e-20 100.9 87 62.1
PSO210G7514 Papaver somniferum HOM05D003310 ORTHO05D003911 6.9e-20 100.9 99 54.5
PSO357G0388 Papaver somniferum HOM05D003310 ORTHO05D003911 6.9e-20 100.9 72 70.8
Migut.J01319 Erythranthe guttata HOM05D003310 ORTHO05D003911 9.0e-20 100.5 87 57.5
Nitab4.5_0001970g0010 Nicotiana tabacum HOM05D003310 ORTHO05D003911 9.0e-20 100.5 87 59.8
PSO761G0723 Papaver somniferum HOM05D003310 ORTHO05D003911 9.0e-20 100.5 98 54.1
Peaxi162Scf00108g00616 Petunia axillaris HOM05D003310 ORTHO05D003911 9.0e-20 100.5 87 58.6
Sp6g19730 Schrenkiella parvula HOM05D003310 ORTHO05D003911 9.0e-20 100.5 67 70.1
MD17G1171100 Malus domestica HOM05D003310 ORTHO05D003911 1.5e-19 99.8 87 58.6
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.5e-19 99.8 87 58.6
Atru.chr7.157 Acer truncatum HOM05D003310 ORTHO05D003911 2.0e-19 99.4 87 57.5
AagrBONN_evm.TU.Sc2ySwM_228.430 Anthoceros agrestis HOM05D003310 ORTHO05D003911 2.0e-19 99.4 68 69.1
Cfa020851 Carpinus fangiana HOM05D003310 ORTHO05D003911 2.0e-19 99.4 87 58.6
DCAR_019371 Daucus carota HOM05D003310 ORTHO05D003911 2.0e-19 99.4 87 57.5
Lalb_Chr03g0042481 Lupinus albus HOM05D003310 ORTHO05D003911 2.0e-19 99.4 67 65.7
Haze_19239 Corylus avellana HOM05D003310 ORTHO05D003911 2.6e-19 99.0 87 58.6
PSO170G5058 Papaver somniferum HOM05D003310 ORTHO05D003911 2.6e-19 99.0 72 69.4
Sed0019848 Sechium edule HOM05D003310 ORTHO05D003911 2.6e-19 99.0 87 58.6
arahy.Tifrunner.gnm1.ann1.2IXB55 Arachis hypogaea HOM05D003310 ORTHO05D003911 3.4e-19 98.6 90 55.6
BraA10t43618Z Brassica rapa HOM05D003310 ORTHO05D003911 3.4e-19 98.6 67 70.1
ECA240G4234 Erigeron canadensis HOM05D003310 ORTHO05D003911 3.4e-19 98.6 86 60.5
BcaB08g36153 Brassica carinata HOM05D003310 ORTHO05D003911 4.5e-19 98.2 67 70.1
BcaC04g19910 Brassica carinata HOM05D003310 ORTHO05D003911 4.5e-19 98.2 67 70.1
A10p16110 Brassica napus HOM05D003310 ORTHO05D003911 4.5e-19 98.2 67 70.1
C09p49980 Brassica napus HOM05D003310 ORTHO05D003911 4.5e-19 98.2 67 70.1
BolC9t57851H Brassica oleracea HOM05D003310 ORTHO05D003911 4.5e-19 98.2 67 70.1
ECA240G3497 Erigeron canadensis HOM05D003310 ORTHO05D003911 4.5e-19 98.2 70 64.3
HanXRQChr12g0357281 Helianthus annuus HOM05D003310 ORTHO05D003911 5.8e-19 97.8 68 66.2
Medtr4g105490 Medicago truncatula HOM05D003310 ORTHO05D003911 5.8e-19 97.8 67 73.1
Psat4g058880 Pisum sativum HOM05D003310 ORTHO05D003911 5.8e-19 97.8 67 73.1
Aqoxy6G01790 Aquilegia oxysepala HOM05D003310 ORTHO05D003911 7.6e-19 97.4 87 56.3
BcaC03g14126 Brassica carinata HOM05D003310 ORTHO05D003911 9.9e-19 97.1 67 68.7
A02p08010 Brassica napus HOM05D003310 ORTHO05D003911 9.9e-19 97.1 67 68.7
C02p13660 Brassica napus HOM05D003310 ORTHO05D003911 9.9e-19 97.1 67 68.7
BraA02t05873Z Brassica rapa HOM05D003310 ORTHO05D003911 9.9e-19 97.1 67 68.7
Lsat_1_v5_gn_5_91400 Lactuca sativa HOM05D003310 ORTHO05D003911 9.9e-19 97.1 68 67.6
Mapoly0127s0017 Marchantia polymorpha HOM05D003310 ORTHO05D003911 9.9e-19 97.1 67 68.7
SalBow1G7292 Salvia bowleyana HOM05D003310 ORTHO05D003911 9.9e-19 97.1 87 55.2
unitig_52.g17568 Utricularia gibba HOM05D003310 ORTHO05D003911 9.9e-19 97.1 87 57.5
HPP92_004427 Vanilla planifolia HOM05D003310 ORTHO05D003911 9.9e-19 97.1 84 63.1
ECA234G0443 Erigeron canadensis HOM05D003310 ORTHO05D003911 1.3e-18 96.7 68 66.2
HPP92_004387 Vanilla planifolia HOM05D003310 ORTHO05D003911 1.3e-18 96.7 84 63.1
DCAR_012641 Daucus carota HOM05D003310 ORTHO05D002425 1.7e-18 96.3 66 68.2
BcaB05g22399 Brassica carinata HOM05D003310 ORTHO05D003911 2.2e-18 95.9 67 67.2
HanXRQChr10g0314611 Helianthus annuus HOM05D003310 ORTHO05D003911 2.2e-18 95.9 68 66.2
BolC2t07478H Brassica oleracea HOM05D003310 ORTHO05D003911 2.9e-18 95.5 67 68.7
AUR62043315 Chenopodium quinoa HOM05D003310 ORTHO05D003911 2.9e-18 95.5 75 60.0
AUR62044192 Chenopodium quinoa HOM05D003310 ORTHO05D003911 2.9e-18 95.5 75 60.0
AUR62009538 Chenopodium quinoa HOM05D003310 ORTHO05D003911 3.8e-18 95.1 75 60.0
EL10Ac9g22448 Beta vulgaris HOM05D003310 ORTHO05D003911 4.9e-18 94.7 75 60.0
Sc12g0008910 Simmondsia chinensis HOM05D003310 ORTHO05D003911 6.4e-18 94.4 75 61.3
Hund08390 Selenicereus undatus HOM05D003310 ORTHO05D003911 1.1e-17 93.6 75 58.7
TPR.G37572 Trifolium pratense HOM05D003310 ORTHO05D003911 4.2e-17 91.7 65 70.8
HPP92_027190 Vanilla planifolia HOM05D003310 ORTHO05D003911 5.4e-17 91.3 67 68.7
SMO358G0658 Selaginella moellendorffii HOM05D003310 ORTHO05D003911 7.1e-17 90.9 76 60.5
CBR_g31440 Chara braunii HOM05D003310 ORTHO05D003911 1.2e-16 90.1 115 42.6
Zm00001eb146760 Zea mays HOM05D003310 ORTHO05D003911 1.2e-16 90.1 77 61.0
Zm00001eb366710 Zea mays HOM05D003310 ORTHO05D003911 1.6e-16 89.7 77 61.0
SEGI_02362 Sequoiadendron giganteum HOM05D003310 ORTHO05D003911 2.1e-16 89.4 75 58.7
TAR374G1612 Trochodendron aralioides HOM05D003310 ORTHO05D003911 6.0e-16 87.8 63 71.4
Pp3c16_16980 Physcomitrium patens HOM05D003310 ORTHO05D003911 7.9e-16 87.4 67 62.7
unitig_62.g23483 Utricularia gibba HOM05D003310 ORTHO05D003911 7.9e-16 87.4 65 64.6
AT5G58180 Arabidopsis thaliana HOM05D003310 ORTHO05D003911 1.0e-15 87.0 69 62.3
Pp3c27_2650 Physcomitrium patens HOM05D003310 ORTHO05D003911 1.0e-15 87.0 67 61.2
Zm00001eb362460 Zea mays HOM05D003310 ORTHO05D003911 6.7e-15 84.3 77 57.1
Os01g0866300 Oryza sativa ssp. japonica HOM05D003310 ORTHO05D003911 2.5e-14 82.4 80 56.2
Os01g0964000 Oryza sativa ssp. japonica HOM05D003310 ORTHO05D003911 2.5e-14 82.4 81 55.6
PSO302G0011 Papaver somniferum HOM05D003310 ORTHO05D003911 4.3e-14 81.6 80 51.2
Zm00001eb356250 Zea mays HOM05D003310 ORTHO05D003911 7.4e-14 80.9 75 54.7
CSS0028901 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 1.3e-13 80.1 54 64.8
vmacro08171 Vaccinium macrocarpon HOM05D003310 ORTHO05D003911 1.3e-13 80.1 67 56.7
MCO13G211 Micromonas commoda HOM05D003310 ORTHO05D003911 2.6e-11 72.4 67 49.3
PSO407G0004 Papaver somniferum HOM05D003310 ORTHO05D003911 9.9e-11 70.5 69 50.7
A02p07890 Brassica napus HOM05D003310 ORTHO05D003911 1.7e-10 69.7 69 50.7
BraA02t05862Z Brassica rapa HOM05D003310 ORTHO05D003911 1.7e-10 69.7 69 50.7
PRCOL_00000446 Prasinoderma coloniale HOM05D003310 ORTHO05D003911 2.2e-10 69.3 65 52.3
C02p13530 Brassica napus HOM05D003310 ORTHO05D003911 3.8e-10 68.6 69 50.7
BolC2t07465H Brassica oleracea HOM05D003310 ORTHO05D003911 3.8e-10 68.6 69 50.7
CDE11G0734 Ceratophyllum demersum HOM05D003310 ORTHO05D003911 3.5e-08 62.0 33 90.9
Cre17.g728150 Chlamydomonas reinhardtii HOM05D003310 ORTHO05D003911 4.6e-08 61.6 67 43.3
RcHm_v2.0_Chr5g0044951 Rosa chinensis HOM05D003310 ORTHO05D342156 3.3e-06 55.5 61 47.5


User provided reference genes

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