Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.4e-71 271.2 134 100.0
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 4.0e-56 221.5 134 79.9
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 5.2e-56 221.1 134 79.9
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 5.2e-56 221.1 134 79.9
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 5.2e-56 221.1 134 79.9
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 5.2e-56 221.1 134 79.9
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 5.2e-56 221.1 134 79.9
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 6.8e-56 220.7 135 80.7
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 6.8e-56 220.7 135 80.7
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 7.5e-55 217.2 134 79.1
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 7.5e-55 217.2 134 79.1
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 7.5e-55 217.2 134 79.1
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-55 217.2 134 79.1
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-55 217.2 134 79.1
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 7.5e-55 217.2 130 80.0
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.8e-54 215.3 134 78.4
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.8e-54 215.3 131 79.4
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 8.3e-54 213.8 134 78.4
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 8.3e-54 213.8 134 78.4
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 8.3e-54 213.8 134 78.4
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.1e-53 213.4 134 77.6
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.1e-53 213.4 134 77.6
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-53 213.4 134 77.6
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-53 213.4 134 77.6
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.1e-53 213.4 131 77.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.4e-53 213.0 134 77.6
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.4e-53 213.0 134 77.6
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 3.1e-53 211.8 135 77.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 4.1e-53 211.5 134 78.4
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.2e-52 209.9 132 78.8
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.6e-52 209.5 134 76.9
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-52 209.5 135 77.8
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-52 209.5 135 77.8
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-52 209.5 135 77.8
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-52 209.5 135 77.8
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 2.7e-52 208.8 137 75.9
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.3e-51 206.5 134 74.6
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-51 206.1 132 77.3
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.2e-51 205.7 131 76.3
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.2e-51 205.7 129 77.5
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.9e-51 205.3 132 76.5
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 5.0e-51 204.5 127 78.0
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 8.5e-51 203.8 134 75.4
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.9e-50 202.6 130 76.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.2e-50 201.8 133 74.4
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.2e-50 201.8 133 74.4
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.4e-50 200.3 135 77.0
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.2e-49 199.9 135 73.3
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.2e-49 199.9 135 73.3
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-49 199.5 135 73.3
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-49 199.5 135 73.3
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.7e-49 198.7 132 77.3
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 2.7e-49 198.7 139 73.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.6e-49 198.4 126 76.2
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.7e-49 198.0 132 75.0
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.3e-48 195.7 132 76.5
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 3.4e-47 191.8 131 75.6
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 5.4e-45 184.5 130 70.0
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.5e-44 181.4 136 69.9
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-43 180.3 134 68.7
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 2.9e-43 178.7 129 69.8
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.0e-40 170.2 134 64.9
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 3.4e-39 165.2 115 72.2
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 4.9e-38 161.4 115 70.4
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 1.1e-37 160.2 130 68.5
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.8e-37 159.5 135 65.2
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 2.0e-36 156.0 103 76.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.9e-35 152.1 107 70.1
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 5.2e-32 141.4 134 54.5
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.4e-31 138.3 85 76.5
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.1e-29 133.7 82 78.0
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.4e-29 132.5 109 64.2
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.2e-29 132.1 69 91.3
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.1e-29 131.7 109 64.2
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 5.4e-29 131.3 71 83.1
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.4e-29 131.3 74 87.8
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 2.0e-28 129.4 130 56.2
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 3.5e-28 128.6 130 56.2
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.5e-28 128.6 130 56.2
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.0e-27 127.1 130 55.4
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.0e-27 127.1 130 55.4
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.3e-27 125.9 71 80.3
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-27 125.9 80 73.8
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 5.0e-27 124.8 74 78.4
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 5.0e-27 124.8 68 82.4
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 5.0e-27 124.8 68 82.4
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 5.0e-27 124.8 74 79.7
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 6.6e-27 124.4 94 67.0
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 2.8e-25 119.0 127 53.5
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.6e-25 118.6 108 60.2
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.6e-25 118.6 108 60.2
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.9e-24 114.0 67 76.1
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.5e-23 113.2 70 74.3
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 4.9e-22 108.2 93 61.3
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.3e-22 107.5 67 73.1
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 3.2e-21 105.5 97 58.8
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.2e-20 103.6 69 69.6
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.6e-20 103.2 61 77.0
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-19 100.1 55 81.8
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.9e-19 98.6 70 68.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.1e-18 97.1 78 64.1
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 1.6e-17 93.2 76 64.5
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-17 92.4 80 62.5
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 6.8e-16 87.8 58 72.4
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-15 87.0 49 79.6
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.1e-12 76.3 50 74.0
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.3e-11 73.6 129 31.8
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 5.1e-11 71.6 52 65.4
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.3e-10 67.8 66 54.5
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.6e-09 65.5 36 80.6
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.2e-09 64.7 70 55.7
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 5.2e-08 61.6 53 67.9
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 6.8e-08 61.2 40 75.0
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 8.9e-08 60.8 42 69.0
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 2.0e-07 59.7 34 82.4
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 4.4e-07 58.5 36 66.7


User provided reference genes

Program Settings