Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 8.0e-103 377.1 191 100.0
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 3.5e-90 335.1 189 86.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 4.6e-90 334.7 188 86.2
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.3e-89 333.2 189 85.7
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 5.1e-89 331.3 187 85.6
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 8.6e-89 330.5 189 84.7
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.5e-88 329.7 190 84.7
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.9e-88 329.3 189 84.1
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.3e-88 328.2 189 84.1
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 4.3e-88 328.2 189 84.1
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.6e-87 326.2 187 84.5
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.6e-87 326.2 187 85.0
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 2.1e-87 325.9 187 84.5
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 2.8e-87 325.5 188 84.0
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 4.7e-87 324.7 188 83.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 4.7e-87 324.7 189 83.1
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.1e-86 323.6 188 83.5
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 1.4e-86 323.2 187 84.5
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.4e-86 323.2 187 84.5
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 1.4e-86 323.2 187 84.5
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.4e-86 323.2 187 85.0
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 1.4e-86 323.2 188 82.4
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.4e-86 323.2 189 82.0
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 2.3e-86 322.4 187 82.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.3e-86 322.4 187 83.4
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.3e-86 322.4 190 83.2
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 3.1e-86 322.0 187 84.0
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 3.1e-86 322.0 189 82.0
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 4.0e-86 321.6 189 81.5
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 5.2e-86 321.2 183 84.2
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 5.2e-86 321.2 188 84.0
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 6.8e-86 320.9 187 84.0
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 6.8e-86 320.9 188 82.4
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 6.8e-86 320.9 188 82.4
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 8.9e-86 320.5 188 81.9
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 8.9e-86 320.5 189 82.0
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.2e-85 320.1 187 83.4
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.5e-85 319.7 187 83.4
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 1.5e-85 319.7 188 82.4
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.5e-85 319.7 183 83.6
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.0e-85 319.3 191 80.1
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 2.6e-85 318.9 187 82.4
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 3.4e-85 318.5 187 83.4
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 3.4e-85 318.5 188 82.4
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 4.4e-85 318.2 188 80.9
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 5.8e-85 317.8 187 81.8
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 7.6e-85 317.4 189 81.0
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 7.6e-85 317.4 188 81.4
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 9.9e-85 317.0 188 82.4
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 9.9e-85 317.0 190 81.6
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 9.9e-85 317.0 187 80.7
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.7e-84 316.2 187 84.0
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 2.2e-84 315.8 187 78.6
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.9e-84 315.5 188 80.3
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 3.8e-84 315.1 189 81.0
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 4.9e-84 314.7 189 81.0
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 6.4e-84 314.3 187 82.4
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 8.4e-84 313.9 187 80.7
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 8.4e-84 313.9 187 82.4
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.1e-83 313.5 182 82.4
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.1e-83 313.5 187 81.3
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.1e-83 313.5 189 81.0
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-83 313.2 183 82.5
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.4e-83 313.2 189 80.4
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-83 312.8 187 79.1
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.9e-83 312.8 187 81.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.2e-83 312.0 177 85.3
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.1e-83 311.6 187 78.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 7.1e-83 310.8 187 80.7
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.2e-82 310.1 188 79.8
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.2e-82 310.1 185 81.1
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.6e-82 309.7 188 77.7
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 1.6e-82 309.7 183 83.6
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 3.5e-82 308.5 180 81.7
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.5e-82 308.5 187 79.7
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.6e-82 308.1 188 79.3
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 4.6e-82 308.1 188 79.8
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 7.8e-82 307.4 180 82.2
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.0e-81 307.0 187 79.7
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.3e-81 306.6 182 78.0
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.3e-81 306.6 188 78.2
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.3e-81 306.6 179 81.6
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.7e-81 306.2 188 78.2
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.7e-81 306.2 188 78.2
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.7e-81 306.2 179 80.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.7e-81 306.2 179 80.4
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.7e-81 306.2 189 78.3
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.7e-81 306.2 189 78.3
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.7e-81 306.2 187 78.6
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 3.9e-81 305.1 187 79.1
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.1e-81 304.7 188 76.6
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 6.6e-81 304.3 180 80.6
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 8.6e-81 303.9 188 76.6
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.1e-80 303.5 180 80.6
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.3e-80 301.6 186 77.4
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 4.3e-80 301.6 185 77.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 7.3e-80 300.8 182 78.6
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 7.3e-80 300.8 189 78.8
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.6e-80 300.4 188 76.6
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.2e-79 300.1 187 77.5
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.2e-79 300.1 210 71.0
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.1e-79 299.3 188 77.7
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.4e-78 296.6 188 76.6
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.4e-77 292.0 167 84.4
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 9.9e-77 290.4 188 78.2
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 9.3e-75 283.9 176 75.6
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 9.3e-75 283.9 180 73.9
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 2.1e-71 272.7 186 67.7
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 4.9e-68 261.5 187 68.4
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 6.7e-65 251.1 180 70.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.3e-60 236.9 179 59.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 3.0e-57 225.7 185 57.8
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.1e-48 197.2 118 78.0
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 9.0e-46 187.6 118 73.7
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.4e-45 185.7 111 80.2
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.7e-44 183.3 191 49.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.1e-40 170.6 189 47.6
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 7.9e-26 121.3 177 37.3
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.5e-20 101.3 75 72.0
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.4e-17 94.0 55 76.4
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.6e-16 89.7 56 75.0
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.0e-12 77.8 61 63.9
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 7.5e-08 61.6 184 28.3
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 8.3e-07 58.2 177 27.1
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-06 57.8 177 27.1
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.1e-06 57.8 177 27.1
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.1e-06 57.8 183 26.8
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-06 57.4 177 27.1
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.8e-06 57.0 177 26.6
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 1.8e-06 57.0 184 23.4
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.8e-06 57.0 182 23.1
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 2.4e-06 56.6 186 24.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 3.1e-06 56.2 186 25.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 3.1e-06 56.2 186 27.4
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 4.1e-06 55.8 187 24.6
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 5.4e-06 55.5 184 24.5
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 5.4e-06 55.5 179 25.1
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 9.1e-06 54.7 186 22.6
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 9.1e-06 54.7 186 24.2
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 9.1e-06 54.7 186 23.1


User provided reference genes

Program Settings