Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 4.5e-106 387.9 188 100.0
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.3e-94 349.0 188 86.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 86.7
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.7
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 86.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 85.6
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 85.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 85.6
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 180 87.2
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 85.1
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.6
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.6
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.6
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 84.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 84.0
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 81.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.6
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 83.5
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 83.5
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.5
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.5
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.0
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.0
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.0
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.5
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 82.4
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.5e-88 328.9 185 83.2
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.4
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 80.9
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 80.9
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.9
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 82.4
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 80.9
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.9
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 80.3
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.4
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 2.7e-87 325.5 185 81.6
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 79.8
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.4
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 80.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 80.9
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 4.7e-87 324.7 185 81.6
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 7.9e-87 323.9 185 79.5
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 7.9e-87 323.9 185 79.5
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 79.8
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 79.3
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.8e-86 322.8 180 83.3
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.8e-86 322.8 187 80.7
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 79.8
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 6.7e-86 320.9 185 78.9
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 78.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 78.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 78.7
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 78.2
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 78.7
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 78.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 78.7
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 79.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 78.7
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 78.7
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 78.7
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 79.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.3e-84 316.6 179 82.7
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 77.7
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 76.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 3.7e-84 315.1 190 79.5
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 3.7e-84 315.1 190 79.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.7e-84 315.1 189 79.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 77.1
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 77.1
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 77.1
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 77.7
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 77.1
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 78.3
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.7e-81 306.2 189 77.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 8.5e-81 303.9 189 78.3
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 77.8
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.5e-80 302.4 189 76.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 75.0
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 76.1
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 9.4e-80 300.4 190 75.8
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 77.1
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 73.9
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 76.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 73.9
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 3.0e-78 295.4 188 73.9
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 73.9
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.0e-78 295.0 174 79.9
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 74.5
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 74.5
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 6.7e-78 294.3 188 72.3
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 9.7e-77 290.4 188 71.3
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.2e-76 289.3 169 78.1
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 3.1e-75 285.4 188 71.8
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.3e-73 280.0 179 74.9
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.1e-72 276.9 187 68.4
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.5e-72 276.6 189 68.3
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.5e-72 276.6 188 70.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 71.3
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.6e-71 273.1 187 68.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.7e-71 271.6 179 71.5
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.2e-69 266.9 187 66.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.5e-69 266.5 188 71.3
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-68 263.5 177 72.3
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.8e-68 261.5 188 70.2
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 4.2e-64 248.4 188 61.2
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.0e-62 241.9 177 62.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.7e-61 238.0 188 64.4
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 7.5e-61 237.7 181 64.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 3.5e-58 228.8 165 69.7
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 4.6e-50 201.8 187 52.4
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.6e-45 186.0 115 74.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.3e-44 183.7 127 69.3
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 4.1e-43 178.7 121 68.6
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 9.2e-43 177.6 109 76.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 6.0e-42 174.9 123 71.5
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.0e-41 171.8 173 55.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-39 167.2 188 50.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.5e-37 160.2 85 87.1
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-30 136.7 78 79.5
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 4.7e-23 112.1 91 61.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 9.0e-22 107.8 64 75.0
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.6e-10 70.5 35 91.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 2.8e-07 59.7 39 66.7
Cfa022336 Carpinus fangiana HOM05D004362 ORTHO05D122733 9.0e-06 54.7 75 41.3


User provided reference genes

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