Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1649.0 806 100.0
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1173.3 757 74.2
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1172.1 763 74.6
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 757 74.2
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1167.9 762 74.5
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 744 74.7
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1164.1 757 73.8
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1163.3 784 71.8
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1162.5 778 72.1
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 764 73.2
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 748 74.5
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1157.1 763 73.5
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1153.3 783 70.9
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 760 73.2
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1145.6 781 70.8
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1145.2 787 70.1
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1141.7 765 72.4
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1141.3 774 72.1
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1140.2 776 71.1
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1140.2 767 72.2
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1138.3 760 71.3
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1137.5 779 71.4
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1137.1 782 70.6
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1137.1 781 70.3
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 798 69.8
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1135.9 753 71.2
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1135.2 760 72.4
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1134.4 770 70.8
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1133.6 781 69.8
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1131.7 787 69.9
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1127.5 750 71.3
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1127.1 764 71.9
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1125.5 749 71.6
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1122.1 744 71.6
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1121.3 741 72.3
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 793 69.7
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1117.1 753 71.2
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1117.1 739 71.7
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1116.3 754 70.3
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1115.5 788 69.0
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1115.5 774 68.9
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1114.8 749 71.2
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1114.8 767 70.8
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1114.0 784 68.4
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1114.0 776 69.7
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1113.2 764 69.8
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1112.8 762 69.8
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1112.8 795 68.4
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1112.8 748 70.9
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1112.4 754 70.3
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1111.3 811 67.0
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1109.4 770 70.6
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1108.2 741 70.9
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1107.0 787 68.9
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1106.7 745 71.1
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1105.9 811 67.6
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1104.7 793 70.0
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1102.0 789 67.0
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1100.9 750 69.3
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1100.5 755 70.3
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1099.0 744 70.7
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1097.4 799 68.0
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1090.5 741 69.1
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1089.7 760 68.9
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1088.9 763 69.2
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1087.8 755 69.8
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1087.4 761 69.0
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1087.0 768 69.1
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1086.6 761 69.0
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1086.2 761 69.0
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1082.4 762 68.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1080.1 784 67.2
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1078.2 779 66.2
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1076.6 784 67.0
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1075.5 784 67.2
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 5.0e-311 1070.8 784 66.3
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 7.9e-309 1063.5 795 66.7
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 3.0e-308 1061.6 817 63.4
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 1.5e-304 1049.3 762 66.7
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 1.3e-303 1046.2 687 73.8
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 3.2e-302 1041.6 774 67.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 8.7e-300 1033.5 750 67.6
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 2.6e-296 1021.9 695 70.8
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 7.6e-296 1020.4 684 70.9
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 3.8e-295 1018.1 704 69.7
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 3.2e-294 1015.0 747 63.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 1.8e-292 1009.2 787 63.4
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 1.8e-289 999.2 762 64.6
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.3e-287 993.0 746 63.4
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 5.1e-284 981.1 662 72.1
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.1e-283 979.9 854 60.2
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 7.7e-280 967.2 740 64.2
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 2.5e-278 962.2 684 67.7
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 2.6e-275 952.2 747 61.2
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 6.5e-271 937.6 626 72.8
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.5e-251 873.2 634 67.2
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 5.0e-239 831.6 621 65.9
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.5e-238 830.1 604 67.1
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-224 783.1 677 56.6
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.3e-223 780.4 687 59.2
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 8.9e-212 741.1 520 68.5
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 6.9e-172 608.6 885 40.6
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 6.7e-151 538.9 351 69.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.2e-128 464.9 602 44.9
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.6e-128 464.5 286 75.2
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 2.2e-93 347.8 261 66.3
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.5e-83 313.9 287 59.2
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 6.5e-69 266.5 227 60.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.5e-65 255.4 255 55.7
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 4.1e-55 220.7 148 70.9
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.3e-50 204.9 127 73.2
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.0e-42 179.5 121 71.1
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.6e-38 165.6 100 74.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 3.2e-36 157.9 136 55.1
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 3.0e-26 124.8 93 63.4
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 2.6e-25 121.7 107 55.1
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 2.4e-23 115.2 161 44.1
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 6.8e-18 97.1 105 51.4
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 6.8e-18 97.1 56 83.9
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 4.9e-16 90.9 62 72.6
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 3.6e-11 74.7 47 66.0
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 7.5e-09 67.0 44 65.9
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.3e-08 66.2 41 73.2
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.8e-07 62.4 38 73.7


User provided reference genes

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