Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 2.4e-78 295.4 152 100.0
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.5e-35 153.3 151 56.3
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 1.7e-34 149.8 144 55.6
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 3.7e-34 148.7 144 55.6
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 6.3e-34 147.9 144 55.6
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 1.1e-33 147.1 149 55.7
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.8e-33 146.4 150 56.0
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.4e-33 146.0 150 56.0
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 2.0e-32 142.9 135 57.8
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 3.5e-32 142.1 135 57.8
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 3.5e-32 142.1 150 53.3
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 7.7e-32 141.0 144 53.5
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 1.7e-31 139.8 142 54.2
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.9e-31 139.0 128 58.6
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 3.8e-31 138.7 144 54.2
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 6.5e-31 137.9 151 54.3
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 8.5e-31 137.5 151 53.6
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.1e-30 137.1 150 51.3
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 2.5e-30 136.0 152 52.0
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 2.5e-30 136.0 149 49.0
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 5.5e-30 134.8 150 46.7
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 9.4e-30 134.0 143 54.5
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.2e-29 133.7 144 52.8
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 2.1e-29 132.9 150 50.7
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 6.1e-29 131.3 150 51.3
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.1e-29 131.3 104 58.7
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 1.0e-28 130.6 137 52.6
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.8e-28 129.8 150 50.0
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.3e-28 129.4 104 57.7
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 3.0e-28 129.0 143 49.7
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.5e-27 126.7 151 48.3
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 1.5e-27 126.7 106 60.4
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.0e-27 126.3 128 53.1
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 3.4e-27 125.6 143 48.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 4.4e-27 125.2 151 49.7
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 9.8e-27 124.0 151 48.3
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 9.8e-27 124.0 135 45.9
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 9.8e-27 124.0 133 52.6
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.3e-26 123.6 144 50.0
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.7e-26 123.2 143 47.6
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.7e-26 123.2 143 47.6
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.7e-26 123.2 99 58.6
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 2.2e-26 122.9 150 48.0
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 2.2e-26 122.9 139 50.4
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 3.7e-26 122.1 150 47.3
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 4.8e-26 121.7 101 59.4
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 8.3e-26 120.9 124 53.2
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 8.3e-26 120.9 135 49.6
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.4e-25 120.2 145 48.3
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.4e-25 120.2 145 48.3
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.8e-25 119.8 125 50.4
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.1e-25 118.6 142 47.9
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 5.4e-25 118.2 98 59.2
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 5.4e-25 118.2 142 45.1
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.2e-24 117.1 99 59.6
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 1.2e-24 117.1 152 44.1
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 1.6e-24 116.7 128 50.0
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 1.6e-24 116.7 143 42.7
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 2.7e-24 115.9 150 42.0
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 4.5e-24 115.2 98 53.1
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 5.9e-24 114.8 142 44.4
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 5.9e-24 114.8 102 57.8
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 7.7e-24 114.4 99 57.6
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 7.7e-24 114.4 99 56.6
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.0e-23 114.0 99 57.6
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.3e-23 113.6 99 56.6
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 2.9e-23 112.5 143 46.9
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 2.9e-23 112.5 141 46.8
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 6.5e-23 111.3 98 56.1
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 6.5e-23 111.3 75 70.7
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 1.1e-22 110.5 165 41.8
ATR0693G076 Amborella trichopoda HOM05D000468 ORTHO05D018227 1.9e-22 109.8 92 67.4
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 2.5e-22 109.4 98 55.1
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.5e-22 109.4 158 41.8
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 9.5e-22 107.5 102 54.9
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 2.1e-21 106.3 209 36.8
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.8e-21 105.9 142 44.4
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.8e-21 105.9 133 45.9
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 3.6e-21 105.5 105 49.5
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 6.1e-21 104.8 144 41.7
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.8e-20 103.2 99 49.5
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 1.8e-20 103.2 133 43.6
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 3.0e-20 102.4 150 38.7
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 5.2e-20 101.7 99 49.5
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 5.2e-20 101.7 104 50.0
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 5.2e-20 101.7 123 49.6
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.6e-19 99.4 99 49.5
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 5.7e-19 98.2 103 46.6
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 9.8e-19 97.4 104 42.3
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.3e-18 97.1 157 38.2
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.7e-18 96.7 90 48.9
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 2.8e-18 95.9 102 47.1
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 4.9e-18 95.1 136 42.6
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 6.3e-18 94.7 150 38.0
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 2.4e-17 92.8 89 48.3
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.7e-16 89.4 104 46.2
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 2.7e-16 89.4 99 44.4
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 3.5e-16 89.0 102 47.1
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.5e-16 89.0 109 42.2
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.0e-15 87.4 102 43.1
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.7e-15 86.7 99 41.4
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.7e-15 86.7 138 37.7
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.9e-15 85.9 154 36.4
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 2.9e-15 85.9 102 42.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.9e-15 85.9 154 36.4
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 2.9e-15 85.9 99 41.4
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 6.6e-15 84.7 99 40.4
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.1e-14 84.0 98 43.9
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.5e-14 83.6 99 40.4
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 1.9e-14 83.2 102 42.2
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.9e-14 83.2 99 41.4
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.9e-14 83.2 99 40.4
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.9e-14 83.2 115 37.4
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 7.3e-14 81.3 102 40.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 9.5e-14 80.9 101 39.6
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 9.5e-14 80.9 94 43.6
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 9.5e-14 80.9 94 43.6
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.6e-13 80.1 78 50.0
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.8e-13 79.3 94 42.6
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 8.0e-13 77.8 98 38.8
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 8.0e-13 77.8 126 38.9
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.4e-12 77.0 98 37.8
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 1.4e-12 77.0 98 38.8
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 1.4e-12 77.0 98 37.8
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.4e-12 77.0 98 37.8
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.4e-12 77.0 98 37.8
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 2.3e-12 76.3 110 41.8
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 3.0e-12 75.9 99 38.4
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 6.8e-12 74.7 115 34.8
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.2e-11 73.9 115 41.7
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 6.4e-10 68.2 40 75.0
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 8.3e-10 67.8 45 68.9
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 4.1e-09 65.5 100 39.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.9e-08 61.6 45 57.8
ATR0463G001 Amborella trichopoda HOM05D002781 ORTHO05D003382 1.3e-07 60.5 37 83.8


User provided reference genes

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