Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.6e-29 132.1 66 100.0
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 8.8e-25 116.3 66 83.3
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 2.6e-24 114.8 66 81.8
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.8e-23 111.3 66 80.3
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.8e-23 111.3 66 78.8
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.8e-23 111.3 66 78.8
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 2.8e-23 111.3 66 81.8
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.1e-22 109.4 66 78.8
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 2.4e-22 108.2 66 78.8
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 3.1e-22 107.8 66 77.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 4.1e-22 107.5 66 74.2
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 4.1e-22 107.5 64 78.1
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 5.4e-22 107.1 66 77.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 7.0e-22 106.7 66 75.8
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 7.0e-22 106.7 66 72.7
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 9.1e-22 106.3 66 72.7
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 1.2e-21 105.9 66 74.2
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.6e-21 105.5 66 77.3
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 2.7e-21 104.8 66 75.8
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 3.5e-21 104.4 64 75.0
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 4.5e-21 104.0 65 70.8
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 4.5e-21 104.0 66 71.2
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 5.9e-21 103.6 66 71.2
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 5.9e-21 103.6 66 69.7
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 7.7e-21 103.2 65 72.3
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 7.7e-21 103.2 65 72.3
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 7.7e-21 103.2 66 71.2
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 1.0e-20 102.8 66 68.2
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.0e-20 102.8 66 69.7
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.0e-20 102.8 66 75.8
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.0e-20 102.8 66 74.2
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.3e-20 102.4 66 72.7
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 1.3e-20 102.4 66 72.7
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 1.7e-20 102.1 66 69.7
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 1.7e-20 102.1 64 71.9
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 2.3e-20 101.7 66 75.8
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 2.3e-20 101.7 66 72.7
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 5.0e-20 100.5 66 71.2
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 5.0e-20 100.5 66 71.2
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 5.0e-20 100.5 66 71.2
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 5.0e-20 100.5 66 72.7
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 1.1e-19 99.4 66 68.2
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 1.1e-19 99.4 64 73.4
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.5e-19 99.0 64 71.9
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 1.5e-19 99.0 64 71.9
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 1.5e-19 99.0 64 71.9
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.5e-19 99.0 66 69.7
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 1.9e-19 98.6 65 72.3
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 1.9e-19 98.6 65 72.3
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 3.3e-19 97.8 64 70.3
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 5.5e-19 97.1 63 69.8
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 7.2e-19 96.7 64 68.8
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.2e-18 95.9 63 69.8
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 1.2e-18 95.9 64 70.3
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 1.6e-18 95.5 66 69.7
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.6e-18 95.5 63 69.8
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.6e-18 95.5 64 68.8
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 2.1e-18 95.1 63 68.3
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 2.1e-18 95.1 64 68.8
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 2.8e-18 94.7 66 68.2
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 2.8e-18 94.7 63 73.0
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 2.8e-18 94.7 66 69.7
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 4.7e-18 94.0 66 69.7
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 4.7e-18 94.0 66 69.7
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 6.1e-18 93.6 64 65.6
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 8.0e-18 93.2 66 68.2
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 1.4e-17 92.4 64 65.6
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 1.8e-17 92.0 63 66.7
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.8e-17 92.0 64 65.6
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.3e-17 91.7 63 66.7
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.3e-17 91.7 63 66.7
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.3e-17 91.7 63 66.7
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 3.0e-17 91.3 63 71.4
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 4.0e-17 90.9 64 67.2
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.0e-17 90.9 63 66.7
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 5.2e-17 90.5 64 67.2
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 5.2e-17 90.5 66 66.7
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 8.9e-17 89.7 63 69.8
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 8.9e-17 89.7 63 65.1
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 8.9e-17 89.7 63 65.1
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 1.2e-16 89.4 66 65.2
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.5e-16 89.0 66 65.2
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 1.5e-16 89.0 66 65.2
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 2.0e-16 88.6 63 69.8
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.4e-16 87.8 63 65.1
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 3.4e-16 87.8 63 65.1
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.4e-16 87.8 63 68.3
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 3.4e-16 87.8 64 65.6
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 5.7e-16 87.0 63 60.3
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 5.7e-16 87.0 63 60.3
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 7.5e-16 86.7 64 64.1
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 7.5e-16 86.7 63 68.3
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 1.3e-15 85.9 64 62.5
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 1.7e-15 85.5 66 60.6
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.8e-15 84.7 64 60.9
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.7e-15 84.3 64 62.5
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 6.3e-15 83.6 63 58.7
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 1.1e-14 82.8 63 61.9
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 4.1e-14 80.9 60 61.7
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 5.4e-14 80.5 63 60.3
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 2.7e-13 78.2 65 55.4
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.7e-13 78.2 63 60.3
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 4.5e-13 77.4 64 56.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 4.5e-13 77.4 64 56.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 4.5e-13 77.4 64 56.2
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 4.5e-13 77.4 64 56.2
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.9e-13 77.0 65 61.5
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 5.9e-13 77.0 66 51.5
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.0e-12 76.3 63 58.7
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.0e-12 76.3 63 58.7
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.3e-12 75.9 63 57.1
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.3e-12 75.9 63 57.1
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.3e-12 75.9 63 57.1
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.3e-12 75.9 64 56.2
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.3e-12 75.9 64 54.7
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.7e-12 75.5 64 53.1
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.7e-12 75.5 63 57.1
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.3e-12 75.1 64 54.7
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.3e-12 75.1 63 58.7
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 3.9e-12 74.3 63 55.6
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 3.9e-12 74.3 63 55.6
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 5.0e-12 73.9 65 53.8
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 5.0e-12 73.9 63 54.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 8.6e-12 73.2 64 54.7
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 8.6e-12 73.2 63 55.6
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 8.6e-12 73.2 63 55.6
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 8.6e-12 73.2 63 55.6
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 8.6e-12 73.2 63 55.6
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 1.5e-11 72.4 58 56.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.9e-11 72.0 61 60.7
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 4.3e-11 70.9 65 52.3
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 5.6e-11 70.5 63 54.0
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.2e-10 69.3 43 72.1


User provided reference genes

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