Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 0.0e+00 1380.5 687 100.0
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 0.0e+00 1325.1 687 95.9
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.3e-182 644.0 727 55.7
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 6.3e-182 641.7 747 52.7
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.5e-180 635.6 705 54.8
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.3e-179 634.0 732 54.6
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 3.2e-178 629.4 596 61.7
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.2e-178 628.2 693 55.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.7e-177 626.3 730 56.0
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 5.2e-176 622.1 701 55.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 8.8e-176 621.3 707 55.6
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 3.3e-175 619.4 730 52.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 9.7e-175 617.8 667 56.2
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 2.8e-174 616.3 733 52.9
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.1e-173 614.4 670 56.1
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.4e-173 613.2 731 53.9
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 3.1e-173 612.8 722 52.5
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 4.1e-173 612.5 721 54.0
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 5.3e-173 612.1 738 53.4
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 7.0e-173 611.7 621 58.9
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.6e-172 610.5 710 54.4
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.6e-172 610.5 730 54.0
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.6e-172 609.8 727 53.1
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 5.9e-172 608.6 728 54.1
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.0e-171 607.8 718 52.6
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.0e-171 607.8 716 52.1
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 2.9e-171 606.3 722 52.8
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 5.0e-171 605.5 750 50.1
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 8.5e-171 604.7 723 53.7
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 1.9e-170 603.6 732 51.8
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 3.2e-170 602.8 608 58.1
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.2e-170 602.8 599 59.3
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.1e-169 600.1 727 52.5
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.1e-169 600.1 652 55.1
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.7e-169 599.7 748 50.7
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 3.0e-168 596.3 745 50.7
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 4.0e-168 595.9 724 51.2
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 6.8e-168 595.1 726 52.2
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 2.0e-167 593.6 711 51.6
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 2.0e-167 593.6 706 53.8
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 4.4e-167 592.4 741 51.1
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 7.5e-167 591.7 710 51.5
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.7e-166 590.5 729 51.9
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 3.7e-166 589.3 724 51.5
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 8.3e-166 588.2 723 51.6
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.8e-165 587.0 724 51.9
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.1e-165 585.9 728 52.3
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 4.1e-165 585.9 713 52.9
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 7.0e-165 585.1 731 50.2
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 9.1e-165 584.7 728 51.6
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 1.2e-164 584.3 717 51.0
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.6e-164 583.9 721 51.2
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 2.0e-164 583.6 723 52.4
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 2.7e-164 583.2 716 52.9
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 2.7e-164 583.2 715 51.0
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 5.9e-164 582.0 722 52.9
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 7.7e-164 581.6 689 51.8
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.2e-163 580.1 725 51.3
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 3.8e-163 579.3 706 52.0
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 5.0e-163 578.9 720 51.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 5.0e-163 578.9 726 51.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.5e-162 576.6 709 51.5
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 5.5e-162 575.5 716 50.3
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 1.6e-161 573.9 720 51.4
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 2.7e-161 573.2 720 51.5
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 8.0e-161 571.6 714 52.2
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.0e-160 569.7 724 51.0
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 4.0e-160 569.3 719 50.8
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.2e-159 567.8 720 51.4
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 9.8e-159 564.7 731 50.6
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 2.2e-158 563.5 580 56.6
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.8e-158 563.1 706 52.1
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 6.3e-158 562.0 664 53.5
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 8.3e-158 561.6 707 53.0
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.8e-157 560.5 722 51.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 3.1e-157 559.7 608 56.6
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 5.4e-157 558.9 732 50.7
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 7.0e-157 558.5 704 51.0
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 2.0e-156 557.0 727 50.5
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 3.5e-156 556.2 602 54.8
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 7.7e-156 555.1 749 48.9
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 1.0e-155 554.7 587 55.2
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 1.3e-155 554.3 587 55.0
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.1e-154 551.2 710 51.7
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.1e-154 551.2 720 50.0
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 9.5e-154 548.1 730 50.0
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.1e-153 547.0 732 49.3
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 6.1e-153 545.4 707 50.4
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 5.2e-152 542.3 584 54.3
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.5e-151 540.8 723 50.9
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 4.4e-151 539.3 718 49.6
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.7e-151 538.9 575 53.9
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 7.5e-151 538.5 702 50.3
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 3.7e-150 536.2 639 51.3
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.6e-148 529.3 597 54.4
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 5.9e-148 528.9 737 46.7
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 7.8e-148 528.5 582 53.8
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-147 527.7 714 50.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.9e-146 523.9 704 47.6
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.0e-143 513.8 550 55.6
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.8e-137 493.4 720 48.3
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 6.8e-136 488.8 581 51.8
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.2e-135 488.0 662 48.3
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 9.8e-135 485.0 549 52.6
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.1e-132 477.2 552 52.0
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-131 474.6 623 49.0
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.0e-128 463.0 578 49.5
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.0e-123 446.8 504 54.8
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.1e-117 428.3 310 74.2
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 7.9e-108 395.6 595 46.1
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 6.6e-107 392.5 469 54.2
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 9.6e-106 388.7 675 41.2
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 3.5e-100 370.2 407 52.1
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 1.1e-96 358.6 370 59.5
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.5e-90 338.2 897 33.0
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 2.8e-89 334.0 814 33.9
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 1.1e-88 332.0 372 53.2
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 1.5e-87 328.2 347 57.9
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 3.2e-85 320.5 342 55.3
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 3.7e-81 307.0 341 54.3
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.1e-72 276.9 285 56.5
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.0e-70 272.3 366 48.1
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 2.5e-69 267.7 390 45.9
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 1.0e-67 262.3 357 49.3
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.6e-60 238.4 417 41.0
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 8.0e-60 236.1 289 52.6
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 2.0e-50 204.9 299 45.2
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 5.7e-50 203.4 235 53.2
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 2.9e-46 191.0 143 71.3
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.2e-39 169.1 176 47.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.1e-37 162.5 220 47.7
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.4e-32 144.8 120 63.3
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.2e-31 142.5 130 61.5
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 3.9e-30 137.5 424 29.2
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 1.1e-24 119.4 139 51.1
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 2.5e-21 108.2 146 47.3
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.5e-10 72.4 72 55.6
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 5.4e-08 63.9 55 50.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 7.1e-08 63.5 56 51.8
SEGI_24030 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 4.6e-07 60.8 65 44.6
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 1.7e-06 58.9 60 45.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 3.0e-06 58.2 41 61.0
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 6.6e-06 57.0 84 36.9


User provided reference genes

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