Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G089 Amborella trichopoda HOM05D003402 ORTHO05D003939 2.9e-54 214.9 105 100.0
ATR0743G241 Amborella trichopoda HOM05D003402 ORTHO05D003939 2.9e-30 135.2 79 86.1
Potri.011G166000 Populus trichocarpa HOM05D003402 ORTHO05D003939 1.6e-23 112.8 85 68.2
Sabra16G0318200 Salix brachista HOM05D003402 ORTHO05D003939 3.5e-23 111.7 87 69.0
Potri.001G469200 Populus trichocarpa HOM05D003402 ORTHO05D003939 5.9e-23 110.9 87 67.8
Manes.03G143100 Manihot esculenta HOM05D003402 ORTHO05D003939 7.7e-23 110.5 88 65.9
Lj5g0012042 Lotus japonicus HOM05D003402 ORTHO05D003939 1.3e-22 109.8 84 66.7
TAR627G1074 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.3e-22 109.8 88 63.6
MBI10_g27408_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 2.9e-22 108.6 61 83.6
RcHm_v2.0_Chr7g0227141 Rosa chinensis HOM05D003402 ORTHO05D003939 2.9e-22 108.6 84 69.0
FAN03G3056 Fragaria x ananassa HOM05D003402 ORTHO05D003939 3.8e-22 108.2 84 66.7
TAR629G1228 Trochodendron aralioides HOM05D003402 ORTHO05D003939 3.8e-22 108.2 88 63.6
COL.COLO4_07759 Corchorus olitorius HOM05D003402 ORTHO05D003939 5.0e-22 107.8 76 69.7
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 5.0e-22 107.8 84 67.9
FAN08G1169 Fragaria x ananassa HOM05D003402 ORTHO05D003939 6.5e-22 107.5 84 65.5
Nn2g11712 Nelumbo nucifera HOM05D003402 ORTHO05D003939 6.5e-22 107.5 75 69.3
FvH4_5g31610 Fragaria vesca HOM05D003402 ORTHO05D003939 8.5e-22 107.1 84 65.5
Manes.05G206500 Manihot esculenta HOM05D003402 ORTHO05D003939 8.5e-22 107.1 90 63.3
TWI73G0622 Tripterygium wilfordii HOM05D003402 ORTHO05D003939 8.5e-22 107.1 88 62.5
FAN17G0134 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.1e-21 106.7 84 65.5
Prupe.6G032300 Prunus persica HOM05D003402 ORTHO05D003939 1.1e-21 106.7 84 67.9
PGR083G2770 Punica granatum HOM05D003402 ORTHO05D003939 1.1e-21 106.7 83 67.5
MBI16_g24676_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 1.5e-21 106.3 70 74.3
CDE10G1248 Ceratophyllum demersum HOM05D003402 ORTHO05D003939 1.9e-21 105.9 69 75.4
MELO3C005848.2 Cucumis melo HOM05D003402 ORTHO05D003939 1.9e-21 105.9 88 61.4
QL08p001639 Quercus lobata HOM05D003402 ORTHO05D003939 1.9e-21 105.9 88 63.6
Lj6g0015324 Lotus japonicus HOM05D003402 ORTHO05D003939 2.5e-21 105.5 84 61.9
Sed0014715 Sechium edule HOM05D003402 ORTHO05D003939 2.5e-21 105.5 88 62.5
CiPaw.14G096300 Carya illinoinensis HOM05D003402 ORTHO05D003939 3.2e-21 105.1 88 63.6
CsaV3_5G000960 Cucumis sativus L. HOM05D003402 ORTHO05D003939 4.2e-21 104.8 88 60.2
Gorai.013G149600 Gossypium raimondii HOM05D003402 ORTHO05D003939 4.2e-21 104.8 85 62.4
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 5.5e-21 104.4 87 62.1
Prupe.6G031600 Prunus persica HOM05D003402 ORTHO05D003939 5.5e-21 104.4 84 65.5
Atru.chr1.1993 Acer truncatum HOM05D003402 ORTHO05D003939 7.2e-21 104.0 77 66.2
CANSAT01G1535 Cannabis sativa HOM05D003402 ORTHO05D003939 7.2e-21 104.0 79 65.8
ClCG01G000820 Citrullus lanatus HOM05D003402 ORTHO05D003939 7.2e-21 104.0 88 59.1
MELO3C014081.2 Cucumis melo HOM05D003402 ORTHO05D003939 7.2e-21 104.0 88 60.2
Gohir.A13G130156 Gossypium hirsutum HOM05D003402 ORTHO05D003939 7.2e-21 104.0 85 61.2
Lalb_Chr20g0115311 Lupinus albus HOM05D003402 ORTHO05D003939 7.2e-21 104.0 84 64.3
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 9.4e-21 103.6 80 62.5
Glyma.18G072700 Glycine max HOM05D003402 ORTHO05D003939 9.4e-21 103.6 84 60.7
Gohir.A04G003200 Gossypium hirsutum HOM05D003402 ORTHO05D003939 9.4e-21 103.6 60 81.7
Sed0010383 Sechium edule HOM05D003402 ORTHO05D003939 9.4e-21 103.6 88 59.1
CiPaw.11G208600 Carya illinoinensis HOM05D003402 ORTHO05D003939 1.2e-20 103.2 88 61.4
Ca_14849_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 1.2e-20 103.2 84 63.1
Duzib170G0574 Durio zibethinus HOM05D003402 ORTHO05D003939 1.2e-20 103.2 85 62.4
Duzib213G0004 Durio zibethinus HOM05D003402 ORTHO05D003939 1.2e-20 103.2 60 80.0
Gorai.009G453200 Gossypium raimondii HOM05D003402 ORTHO05D003939 1.2e-20 103.2 85 62.4
EL10Ac4g10262 Beta vulgaris HOM05D003402 ORTHO05D003939 1.6e-20 102.8 83 62.7
EL10Ac4g10278 Beta vulgaris HOM05D003402 ORTHO05D003939 1.6e-20 102.8 83 62.7
Ca_27956_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 1.6e-20 102.8 84 63.1
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 1.6e-20 102.8 88 60.2
Gohir.D13G133300 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.6e-20 102.8 85 61.2
Actinidia10580 Actinidia chinensis HOM05D003402 ORTHO05D003939 2.1e-20 102.4 86 59.3
Ca_07475_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 2.1e-20 102.4 84 61.9
Lalb_Chr15g0082451 Lupinus albus HOM05D003402 ORTHO05D003939 2.1e-20 102.4 84 61.9
CSS0009706 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 2.7e-20 102.1 86 59.3
Lj1P897T22 Lonicera japonica HOM05D003402 ORTHO05D003939 2.7e-20 102.1 68 69.1
Phvul.002G190300 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 2.7e-20 102.1 84 59.5
arahy.Tifrunner.gnm1.ann1.YUWQ2H Arachis hypogaea HOM05D003402 ORTHO05D003939 3.6e-20 101.7 84 63.1
AUR62026671 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.6e-20 101.7 61 75.4
Dinv41799 Davidia involucrata HOM05D003402 ORTHO05D003939 3.6e-20 101.7 60 78.3
MD11G1039900 Malus domestica HOM05D003402 ORTHO05D003939 3.6e-20 101.7 73 69.9
TPR.G17934 Trifolium pratense HOM05D003402 ORTHO05D003939 3.6e-20 101.7 80 63.8
HPP92_006270 Vanilla planifolia HOM05D003402 ORTHO05D003939 3.6e-20 101.7 90 58.9
Aqoxy4G03102 Aquilegia oxysepala HOM05D003402 ORTHO05D003939 4.7e-20 101.3 88 59.1
Cpa.g.sc19.128 Carica papaya HOM05D003402 ORTHO05D003939 4.7e-20 101.3 60 78.3
ClCG10G004100 Citrullus lanatus HOM05D003402 ORTHO05D003939 4.7e-20 101.3 88 59.1
Psat5g164680 Pisum sativum HOM05D003402 ORTHO05D003939 4.7e-20 101.3 84 64.3
DCAR_013538 Daucus carota HOM05D003402 ORTHO05D003939 6.1e-20 100.9 63 73.0
MD03G1039400 Malus domestica HOM05D003402 ORTHO05D003939 6.1e-20 100.9 73 68.5
Sed0017285 Sechium edule HOM05D003402 ORTHO05D003939 6.1e-20 100.9 82 63.4
VMungo0251G3320 Vigna mungo HOM05D003402 ORTHO05D003939 6.1e-20 100.9 84 60.7
DCAR_023786 Daucus carota HOM05D003402 ORTHO05D003939 8.0e-20 100.5 63 73.0
Duzib268G1061 Durio zibethinus HOM05D003402 ORTHO05D003939 8.0e-20 100.5 60 76.7
Rhsim09G0029600 Rhododendron simsii HOM05D003402 ORTHO05D003939 8.0e-20 100.5 86 60.5
VMungo0540G0608 Vigna mungo HOM05D003402 ORTHO05D003939 8.0e-20 100.5 72 63.9
AUR62035669 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.0e-19 100.1 61 73.8
Glyma.18G072600 Glycine max HOM05D003402 ORTHO05D003939 1.0e-19 100.1 84 58.3
Lsat_1_v5_gn_5_681 Lactuca sativa HOM05D003402 ORTHO05D003939 1.0e-19 100.1 81 59.3
Oeu017108.1 Olea europaea HOM05D003402 ORTHO05D003939 1.0e-19 100.1 75 65.3
EL10Ac1g01597 Beta vulgaris HOM05D003402 ORTHO05D003939 1.4e-19 99.8 83 59.0
Haze_09893 Corylus avellana HOM05D003402 ORTHO05D003939 1.4e-19 99.8 88 59.1
CANSAT01G1735 Cannabis sativa HOM05D003402 ORTHO05D003939 1.8e-19 99.4 73 67.1
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.3e-19 99.0 75 66.7
Hma1.2p1_0193F.1_g084090 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 2.3e-19 99.0 61 73.8
Nn1g09837 Nelumbo nucifera HOM05D003402 ORTHO05D003939 2.3e-19 99.0 60 78.3
PSO675G7280 Papaver somniferum HOM05D003402 ORTHO05D003939 2.3e-19 99.0 61 68.9
arahy.Tifrunner.gnm1.ann1.Z231WD Arachis hypogaea HOM05D003402 ORTHO05D003939 3.0e-19 98.6 79 63.3
Phvul.006G060100 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 3.0e-19 98.6 56 76.8
PGR042G2666 Punica granatum HOM05D003402 ORTHO05D003939 3.0e-19 98.6 83 65.1
Thecc.07G005500 Theobroma cacao HOM05D003402 ORTHO05D003939 3.0e-19 98.6 85 60.0
unitig_748.g8474 Utricularia gibba HOM05D003402 ORTHO05D003939 3.0e-19 98.6 87 57.5
vmacro11627 Vaccinium macrocarpon HOM05D003402 ORTHO05D003939 4.0e-19 98.2 61 72.1
Ciclev10029250m.g Citrus clementina HOM05D003402 ORTHO05D003939 5.2e-19 97.8 80 62.5
Nitab4.5_0006644g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 5.2e-19 97.8 56 76.8
Nitab4.5_0012601g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 5.2e-19 97.8 56 76.8
Cfa016938 Carpinus fangiana HOM05D003402 ORTHO05D003939 6.8e-19 97.4 88 58.0
AUR62040577 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.8e-19 97.4 61 70.5
MSTRG.3724 Avicennia marina HOM05D003402 ORTHO05D003939 1.2e-18 96.7 60 71.7
Cc07_g13980 Coffea canephora HOM05D003402 ORTHO05D003939 1.2e-18 96.7 56 76.8
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.2e-18 96.7 85 56.5
Gohir.D05G386500 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.2e-18 96.7 85 58.8
Hma1.2p1_2995F.1_g331420 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 1.2e-18 96.7 89 55.1
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 1.5e-18 96.3 57 73.7
Thhalv10021508m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 2.0e-18 95.9 56 75.0
SEGI_07786 Sequoiadendron giganteum HOM05D003402 ORTHO05D003939 2.0e-18 95.9 93 55.9
Sc03g0011690 Simmondsia chinensis HOM05D003402 ORTHO05D003939 2.0e-18 95.9 67 68.7
BcaB06g25476 Brassica carinata HOM05D003402 ORTHO05D003939 2.6e-18 95.5 65 67.7
Migut.K00809 Erythranthe guttata HOM05D003402 ORTHO05D003939 2.6e-18 95.5 73 64.4
AUR62033193 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.4e-18 95.1 75 62.7
Sopen06g034020 Solanum pennellii HOM05D003402 ORTHO05D003939 3.4e-18 95.1 61 70.5
PGSC0003DMG400030475 Solanum tuberosum HOM05D003402 ORTHO05D003939 3.4e-18 95.1 61 70.5
Aa31LG8G510 Aethionema arabicum HOM05D003402 ORTHO05D003939 4.4e-18 94.7 57 70.2
AL3G25080 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 4.4e-18 94.7 60 68.3
Carub.0003s1264 Capsella rubella HOM05D003402 ORTHO05D003939 4.4e-18 94.7 60 68.3
Thhalv10014450m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 4.4e-18 94.7 56 75.0
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 5.7e-18 94.4 56 73.2
Eucgr.K00301 Eucalyptus grandis HOM05D003402 ORTHO05D003939 5.7e-18 94.4 72 65.3
HanXRQChr08g0232741 Helianthus annuus HOM05D003402 ORTHO05D003939 5.7e-18 94.4 72 58.3
Sp1g41330 Schrenkiella parvula HOM05D003402 ORTHO05D003939 5.7e-18 94.4 75 61.3
SGA_v2.0_scaffold45G17223 Striga asiatica HOM05D003402 ORTHO05D003939 5.7e-18 94.4 73 64.4
unitig_0.g2650 Utricularia gibba HOM05D003402 ORTHO05D003939 5.7e-18 94.4 81 60.5
BcaC05g29198 Brassica carinata HOM05D003402 ORTHO05D003939 7.5e-18 94.0 56 73.2
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 7.5e-18 94.0 56 73.2
CARHR087880 Cardamine hirsuta HOM05D003402 ORTHO05D003939 7.5e-18 94.0 56 71.4
Os03g0115200 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 7.5e-18 94.0 78 61.5
AT3G13230 Arabidopsis thaliana HOM05D003402 ORTHO05D003939 9.8e-18 93.6 60 66.7
BolC5t34140H Brassica oleracea HOM05D003402 ORTHO05D003939 9.8e-18 93.6 61 68.9
THA.LOC104822711 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 9.8e-18 93.6 56 73.2
Medtr3g061130 Medicago truncatula HOM05D003402 ORTHO05D003939 1.3e-17 93.2 56 76.8
CAN.G874.67 Capsicum annuum HOM05D003402 ORTHO05D003939 1.7e-17 92.8 56 75.0
Migut.K00808 Erythranthe guttata HOM05D003402 ORTHO05D003939 2.2e-17 92.4 60 70.0
SHI18619 Sapria himalayana HOM05D003402 ORTHO05D003939 2.2e-17 92.4 56 75.0
THA.LOC104801911 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 2.2e-17 92.4 56 69.6
Ciclev10032222m.g Citrus clementina HOM05D003402 ORTHO05D003939 3.7e-17 91.7 73 61.6
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 3.7e-17 91.7 75 57.3
MSTRG.15682 Avicennia marina HOM05D003402 ORTHO05D003939 4.8e-17 91.3 74 60.8
Os01g0788950 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 6.3e-17 90.9 65 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2223 Anthoceros agrestis HOM05D003402 ORTHO05D003939 8.3e-17 90.5 78 55.1
Sp3g11460 Schrenkiella parvula HOM05D003402 ORTHO05D003939 8.3e-17 90.5 74 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5330 Anthoceros agrestis HOM05D003402 ORTHO05D003939 1.4e-16 89.7 61 63.9
Pp3c2_270 Physcomitrium patens HOM05D003402 ORTHO05D003939 1.4e-16 89.7 87 54.0
Zm00001eb151110 Zea mays HOM05D003402 ORTHO05D003939 3.1e-16 88.6 60 68.3
Zm00001eb369690 Zea mays HOM05D003402 ORTHO05D003939 3.1e-16 88.6 73 63.0
BcaB02g10802 Brassica carinata HOM05D003402 ORTHO05D003939 5.4e-16 87.8 72 59.7
BcaC08g44215 Brassica carinata HOM05D003402 ORTHO05D003939 5.4e-16 87.8 73 58.9
C06p16210 Brassica napus HOM05D003402 ORTHO05D003939 5.4e-16 87.8 73 58.9
BolC6t36818H Brassica oleracea HOM05D003402 ORTHO05D003939 5.4e-16 87.8 73 58.9
CANSAT78G0394 Cannabis sativa HOM05D003402 ORTHO05D003939 5.4e-16 87.8 60 63.3
Glyma.08G337300 Glycine max HOM05D003402 ORTHO05D003939 5.4e-16 87.8 58 72.4
Mapoly0008s0090 Marchantia polymorpha HOM05D003402 ORTHO05D003939 7.0e-16 87.4 56 71.4
SMO353G0217 Selaginella moellendorffii HOM05D003402 ORTHO05D003939 1.2e-15 86.7 79 54.4
Zm00001eb138570 Zea mays HOM05D003402 ORTHO05D003939 1.6e-15 86.3 70 62.9
Ah.01g016790 Amaranthus hybridus HOM05D003402 ORTHO05D003939 2.0e-15 85.9 83 53.0
arahy.Tifrunner.gnm1.ann1.V7LA8U Arachis hypogaea HOM05D003402 ORTHO05D003939 2.2e-14 82.4 84 56.0
Sed0019842 Sechium edule HOM05D003402 ORTHO05D003939 4.2e-13 78.2 60 66.7
Sc07g0001980 Simmondsia chinensis HOM05D003402 ORTHO05D003939 9.5e-13 77.0 72 51.4
BcaB02g10801 Brassica carinata HOM05D003402 ORTHO05D003939 8.0e-12 73.9 42 76.2
CBR_g49013 Chara braunii HOM05D003402 ORTHO05D003939 8.0e-12 73.9 60 53.3
MCO11G345 Micromonas commoda HOM05D003402 ORTHO05D003939 3.0e-11 72.0 60 58.3
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 4.4e-10 68.2 75 53.3
AL1G63860 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 5.7e-10 67.8 42 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4666 Anthoceros agrestis HOM05D003402 ORTHO05D003939 9.8e-10 67.0 43 62.8
SGA_v2.0_scaffold17G08096 Striga asiatica HOM05D003402 ORTHO05D003939 1.7e-09 66.2 61 54.1
SGA_v2.0_scaffold312G48272 Striga asiatica HOM05D003402 ORTHO05D003939 1.7e-09 66.2 61 54.1
PRCOL_00004610 Prasinoderma coloniale HOM05D003402 ORTHO05D003939 2.2e-09 65.9 71 46.5
A05p17340 Brassica napus HOM05D003402 ORTHO05D003939 2.8e-09 65.5 51 52.9
BcaB06g25477 Brassica carinata HOM05D003402 ORTHO05D003939 8.3e-09 63.9 50 56.0
Cre12.g549700 Chlamydomonas reinhardtii HOM05D003402 ORTHO05D003939 8.3e-09 63.9 63 49.2
EL10Ac4g07749 Beta vulgaris HOM05D003402 ORTHO05D003939 9.2e-08 60.5 66 48.5
AUR62017904 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.5e-07 58.5 62 51.6
AUR62043565 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.5e-07 58.5 62 51.6
Ah.16g107980 Amaranthus hybridus HOM05D003402 ORTHO05D003939 1.7e-06 56.2 60 50.0
Hund02372 Selenicereus undatus HOM05D003402 ORTHO05D003939 5.0e-06 54.7 78 43.6


User provided reference genes

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