Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 2.0e-217 758.8 384 100.0
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 5.0e-144 515.0 329 79.6
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.9e-143 513.1 304 83.6
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.2e-142 510.4 329 79.3
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 1.6e-142 510.0 308 83.8
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 2.7e-142 509.2 303 84.8
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 6.1e-142 508.1 316 81.3
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 3.0e-141 505.8 331 79.2
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 3.9e-141 505.4 309 82.2
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 6.7e-141 504.6 297 84.2
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 8.8e-141 504.2 304 83.9
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 8.8e-141 504.2 308 81.2
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 2.5e-140 502.7 304 84.2
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 3.3e-140 502.3 309 82.5
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 4.3e-140 501.9 321 80.1
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 4.3e-140 501.9 303 82.2
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 4.3e-140 501.9 296 84.5
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 5.7e-140 501.5 300 84.0
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 5.7e-140 501.5 304 82.2
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 7.4e-140 501.1 304 82.9
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 9.7e-140 500.7 314 80.6
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 3.7e-139 498.8 315 80.3
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 4.8e-139 498.4 299 82.3
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 6.3e-139 498.0 321 78.5
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 8.2e-139 497.7 299 81.9
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.1e-138 497.3 361 72.6
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.8e-138 496.5 329 76.3
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 1.8e-138 496.5 297 82.5
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 1.8e-138 496.5 297 82.5
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 2.4e-138 496.1 301 82.1
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 5.3e-138 495.0 304 82.2
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 5.3e-138 495.0 303 82.2
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 6.9e-138 494.6 304 80.3
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 6.9e-138 494.6 299 83.3
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 9.1e-138 494.2 305 80.0
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 1.2e-137 493.8 308 81.5
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 1.5e-137 493.4 303 80.9
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 2.0e-137 493.0 304 79.9
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 3.4e-137 492.3 316 79.4
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 4.5e-137 491.9 304 80.9
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 4.5e-137 491.9 297 82.5
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 7.7e-137 491.1 304 80.9
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 7.7e-137 491.1 304 80.9
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 2.2e-136 489.6 296 80.7
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.9e-136 489.2 296 80.7
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 2.9e-136 489.2 314 78.3
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 5.0e-136 488.4 305 79.7
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 8.5e-136 487.6 296 80.4
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 1.1e-135 487.3 305 79.7
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 1.4e-135 486.9 297 80.1
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.4e-135 486.9 297 82.5
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 2.5e-135 486.1 297 81.5
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.5e-135 486.1 304 80.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 5.5e-135 485.0 297 80.5
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 7.2e-135 484.6 307 79.5
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 9.4e-135 484.2 296 80.4
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 2.7e-134 482.6 309 78.6
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 6.1e-134 481.5 300 80.3
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 1.4e-133 480.3 304 79.6
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 5.1e-133 478.4 334 74.0
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 5.1e-133 478.4 306 79.1
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 6.7e-133 478.0 296 79.7
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 6.7e-133 478.0 329 74.8
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 1.2e-129 467.2 307 77.2
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 5.9e-129 464.9 334 73.7
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 5.0e-128 461.8 303 77.9
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.5e-127 460.3 308 76.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 3.2e-127 459.1 303 77.6
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 5.5e-127 458.4 350 67.1
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 7.2e-127 458.0 383 64.8
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 4.7e-126 455.3 310 75.5
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 8.8e-125 451.1 304 76.3
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.7e-123 445.7 297 76.8
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 2.4e-122 443.0 263 82.9
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.5e-121 439.1 321 71.3
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 7.7e-121 438.0 321 72.3
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 2.2e-120 436.4 334 69.5
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 8.5e-120 434.5 303 74.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.1e-119 434.1 270 80.4
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.9e-119 433.3 329 69.9
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.4e-114 417.2 489 50.7
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 3.1e-114 416.0 310 68.4
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 4.1e-114 415.6 314 70.1
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.6e-113 413.7 289 73.7
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 5.9e-113 411.8 303 71.6
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.7e-112 410.2 304 72.0
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 2.2e-112 409.8 304 68.4
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 8.5e-112 407.9 303 69.0
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 2.1e-110 403.3 410 54.9
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 6.1e-110 401.7 300 66.3
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 2.0e-108 396.7 300 72.0
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.0e-108 396.7 270 74.8
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 5.7e-108 395.2 233 83.3
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 4.1e-106 389.0 279 73.5
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 1.0e-104 384.4 297 69.4
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.8e-104 382.5 288 66.3
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 1.6e-102 377.1 242 78.5
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 2.1e-102 376.7 262 70.6
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.8e-101 373.6 304 66.8
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 7.5e-100 368.2 227 80.2
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 6.2e-94 348.6 234 76.1
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.0e-93 347.8 218 77.5
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 6.8e-93 345.1 245 73.9
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 4.1e-90 335.9 303 59.7
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 5.4e-90 335.5 209 80.4
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 2.5e-87 326.6 228 70.2
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 1.4e-85 320.9 303 56.1
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 7.1e-82 308.5 297 58.9
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 8.9e-69 265.0 323 48.3
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 3.4e-68 263.1 173 76.9
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 7.8e-65 251.9 176 71.6
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.0e-64 251.5 167 76.6
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 6.6e-64 248.8 225 61.3
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 3.8e-59 233.0 157 76.4
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.4e-58 231.1 148 77.7
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.1e-54 217.2 120 87.5
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 8.1e-54 215.3 119 84.0
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-50 204.1 480 32.9
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 3.2e-50 203.4 133 75.9
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 4.5e-44 183.0 221 49.8
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 5.5e-42 176.0 113 77.0
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 9.3e-42 175.3 262 37.0
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.5e-36 157.9 89 85.4
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 1.0e-32 145.2 306 30.4
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 3.8e-27 126.7 66 86.4
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 4.2e-26 123.2 302 28.1
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 2.0e-23 114.4 79 73.4
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.4e-23 113.2 58 93.1
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.7e-22 110.2 56 92.9
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.8e-21 107.8 62 83.9
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 4.1e-21 106.7 63 79.4
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.0e-19 102.1 70 67.1
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 8.5e-19 99.0 70 71.4
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.6e-12 78.2 60 63.3
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 7.2e-10 69.3 33 87.9
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.2e-07 62.0 43 72.1
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 7.5e-07 59.3 55 54.5


User provided reference genes

Program Settings