Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 6.6e-120 434.1 227 100.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.0e-59 231.9 230 60.0
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.4e-58 230.3 226 59.3
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 4.2e-58 228.8 226 58.8
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.1e-57 226.5 224 58.5
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 2.7e-57 226.1 227 59.5
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.0e-56 224.2 229 59.4
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-56 223.8 224 57.6
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 3.9e-56 222.2 228 60.1
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 5.1e-56 221.9 223 59.2
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 6.7e-56 221.5 224 60.3
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 8.8e-56 221.1 222 57.7
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.3e-55 219.2 216 60.2
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 7.4e-55 218.0 226 56.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.7e-55 217.6 215 60.5
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.3e-54 217.2 222 57.2
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.3e-54 217.2 222 57.7
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.3e-54 217.2 216 60.2
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 3.7e-54 215.7 221 58.8
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 3.7e-54 215.7 219 58.4
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.8e-54 215.3 225 57.3
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 4.8e-54 215.3 219 58.0
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 6.3e-54 214.9 219 58.0
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 6.3e-54 214.9 219 56.6
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 8.2e-54 214.5 219 58.4
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.1e-53 214.2 220 60.0
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 6.9e-53 211.5 218 59.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.5e-52 210.3 215 60.5
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.5e-52 210.3 215 59.1
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 2.0e-52 209.9 223 59.2
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.6e-52 209.5 225 57.8
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.0e-51 207.6 224 58.5
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 2.2e-51 206.5 226 54.9
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.2e-51 206.5 222 55.9
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.2e-51 206.5 220 59.1
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.9e-51 206.1 212 57.1
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 6.5e-51 204.9 229 52.4
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.1e-50 204.1 212 57.1
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.9e-50 203.4 224 54.0
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 5.5e-50 201.8 224 56.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 5.5e-50 201.8 223 55.6
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 7.2e-50 201.4 206 58.7
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 7.2e-50 201.4 225 54.2
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 9.4e-50 201.1 247 50.6
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.2e-49 200.7 215 58.6
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 1.4e-48 197.2 227 53.3
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.4e-48 197.2 220 55.0
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.8e-48 196.8 219 54.8
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.8e-48 196.8 219 55.7
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.8e-48 196.8 227 55.1
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.3e-48 196.4 262 46.9
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.9e-48 195.7 217 56.7
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.9e-48 195.7 256 50.0
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.1e-48 195.3 221 52.5
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 8.8e-48 194.5 217 56.2
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.5e-47 193.7 219 55.7
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.0e-47 193.4 228 53.9
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.6e-47 193.0 215 55.3
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.3e-46 190.7 225 54.7
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.3e-46 190.7 245 53.1
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.2e-46 189.9 223 53.8
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.7e-46 189.1 219 53.0
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 3.7e-46 189.1 214 57.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 4.8e-46 188.7 215 54.9
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 6.3e-46 188.3 218 53.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 6.3e-46 188.3 218 53.2
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 6.3e-46 188.3 217 53.9
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-45 187.6 219 53.4
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-45 187.6 220 53.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.1e-45 187.6 213 52.6
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.1e-45 187.6 221 52.5
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.4e-45 187.2 226 52.2
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.8e-45 186.8 216 54.2
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.8e-45 186.8 219 52.5
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.8e-45 186.8 236 50.0
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 2.4e-45 186.4 221 52.9
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 2.4e-45 186.4 224 52.7
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.1e-45 186.0 226 52.2
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 4.1e-45 185.7 227 50.2
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-44 184.1 220 52.7
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.2e-44 184.1 220 52.7
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.2e-44 184.1 226 51.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.5e-44 183.7 219 49.3
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 2.0e-44 183.3 211 54.0
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 3.5e-44 182.6 218 51.8
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.0e-43 181.0 218 51.8
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.3e-43 180.6 218 51.4
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.7e-43 180.3 219 53.9
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.7e-43 180.3 178 58.4
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.1e-42 177.6 218 51.8
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.9e-42 176.8 230 49.6
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.5e-42 176.4 220 50.0
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 3.2e-42 176.0 224 50.9
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 3.2e-42 176.0 222 48.2
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.2e-42 175.6 304 43.8
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 9.4e-42 174.5 223 49.3
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.2e-41 174.1 218 50.5
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 3.6e-41 172.6 321 38.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.0e-40 171.0 212 52.8
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.8e-40 170.2 222 49.1
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.0e-40 169.5 174 57.5
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.0e-40 169.5 174 57.5
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 6.7e-40 168.3 235 47.7
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.1e-39 167.5 223 48.4
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.1e-39 167.5 223 48.9
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.5e-39 167.2 218 51.8
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.4e-39 165.6 218 48.6
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.7e-38 163.7 219 47.9
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.7e-38 163.7 219 47.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.8e-38 162.2 184 54.9
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 4.1e-37 159.1 219 48.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 4.1e-37 159.1 219 48.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 4.1e-37 159.1 219 48.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 4.1e-37 159.1 218 45.4
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.0e-36 156.8 227 48.0
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 2.2e-35 153.3 225 47.6
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.9e-35 152.9 212 48.6
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 5.0e-35 152.1 219 48.9
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 8.5e-35 151.4 166 53.6
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.5e-34 150.6 223 45.7
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.5e-34 150.6 223 45.7
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 5.5e-34 148.7 208 42.8
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.7e-33 146.4 216 44.4
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.6e-33 146.0 253 41.5
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.6e-33 146.0 253 41.5
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 2.6e-31 139.8 95 75.8
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 4.1e-29 132.5 219 42.9
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.3e-27 127.5 257 37.4
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.6e-23 113.2 158 48.1
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 3.7e-22 109.4 166 46.4
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 6.3e-22 108.6 156 46.8
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 5.4e-21 105.5 169 43.2
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 3.5e-20 102.8 153 47.1
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.9e-20 102.1 212 35.8
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.9e-19 99.8 133 52.6
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.1e-18 97.8 122 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.1e-18 97.8 70 67.1
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.0e-11 74.7 165 38.8
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 5.6e-10 68.9 207 30.4
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 7.3e-10 68.6 47 74.5
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 2.1e-09 67.0 96 46.9
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 8.0e-09 65.1 135 36.3
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.0e-08 64.7 75 57.3
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 2.3e-08 63.5 229 31.0
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 2.0e-07 60.5 52 57.7
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 2.0e-07 60.5 52 57.7
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.0e-07 60.5 80 46.2


User provided reference genes

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