Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0684G069 Amborella trichopoda HOM05D000048 ORTHO05D000436 8.3e-27 122.9 58 100.0
CiPaw.02G022300 Carya illinoinensis HOM05D000048 ORTHO05D000436 6.6e-08 60.1 35 74.3
PGR031G1417 Punica granatum HOM05D000048 ORTHO05D000436 6.6e-08 60.1 43 55.8
QL02p004620 Quercus lobata HOM05D000048 ORTHO05D000436 1.1e-07 59.3 42 57.1
TWI53G0736 Tripterygium wilfordii HOM05D000048 ORTHO05D000436 1.5e-07 58.9 38 65.8
QL02p002115 Quercus lobata HOM05D000048 ORTHO05D000436 1.9e-07 58.5 42 57.1
CiPaw.01G048300 Carya illinoinensis HOM05D000048 ORTHO05D000436 2.5e-07 58.2 46 52.2
arahy.Tifrunner.gnm1.ann1.G80ETX Arachis hypogaea HOM05D000048 ORTHO05D000436 3.3e-07 57.8 42 54.8
arahy.Tifrunner.gnm1.ann1.WPG9ZU Arachis hypogaea HOM05D000048 ORTHO05D000436 4.3e-07 57.4 42 54.8
Ciclev10000950m.g Citrus clementina HOM05D000048 ORTHO05D000436 4.3e-07 57.4 42 57.1
PGR031G0535 Punica granatum HOM05D000048 ORTHO05D000436 4.3e-07 57.4 42 54.8
Dinv44821 Davidia involucrata HOM05D000048 ORTHO05D000436 5.6e-07 57.0 42 54.8
Lalb_Chr08g0242271 Lupinus albus HOM05D000048 ORTHO05D000436 5.6e-07 57.0 42 54.8
QL02p002092 Quercus lobata HOM05D000048 ORTHO05D000436 7.3e-07 56.6 42 54.8
arahy.Tifrunner.gnm1.ann1.FJ2DZD Arachis hypogaea HOM05D000048 ORTHO05D000445 9.5e-07 56.2 46 52.2
Ciclev10025480m.g Citrus clementina HOM05D000048 ORTHO05D000436 9.5e-07 56.2 35 65.7
MBI06_g18774_MAGBIO Magnolia biondii HOM05D000048 ORTHO05D000436 9.5e-07 56.2 42 64.3
MD08G1190900 Malus domestica HOM05D000048 ORTHO05D000436 9.5e-07 56.2 42 54.8
Aqoxy6G00685 Aquilegia oxysepala HOM05D000048 ORTHO05D000436 1.2e-06 55.8 34 73.5
arahy.Tifrunner.gnm1.ann1.T29US9 Arachis hypogaea HOM05D000048 ORTHO05D000445 1.2e-06 55.8 42 57.1
Carub.0008s2623 Capsella rubella HOM05D000048 ORTHO05D000436 1.2e-06 55.8 38 63.2
AUR62003281 Chenopodium quinoa HOM05D000048 ORTHO05D000436 1.2e-06 55.8 35 68.6
Thecc.01G093700 Theobroma cacao HOM05D000048 ORTHO05D000436 1.2e-06 55.8 38 63.2
TPR.G6313 Trifolium pratense HOM05D000048 ORTHO05D000436 1.2e-06 55.8 42 54.8
Atru.chr13.1090 Acer truncatum HOM05D000048 ORTHO05D000436 1.6e-06 55.5 43 55.8
Atru.chr13.1091 Acer truncatum HOM05D000048 ORTHO05D000436 1.6e-06 55.5 41 51.2
AUR62027187 Chenopodium quinoa HOM05D000048 ORTHO05D000436 1.6e-06 55.5 35 65.7
Lj1g0003837 Lotus japonicus HOM05D000048 ORTHO05D000436 1.6e-06 55.5 40 57.5
PGR102G0448 Punica granatum HOM05D000048 ORTHO05D000445 1.6e-06 55.5 42 59.5
TWI77G0557 Tripterygium wilfordii HOM05D000048 ORTHO05D000436 1.6e-06 55.5 38 57.9
Atru.chr13.1086 Acer truncatum HOM05D000048 ORTHO05D000436 2.1e-06 55.1 40 60.0
Carub.0001s1131 Capsella rubella HOM05D000048 ORTHO05D001179 2.1e-06 55.1 40 60.0
Prupe.2G037200 Prunus persica HOM05D000048 ORTHO05D000445 2.1e-06 55.1 39 59.0
Prupe.2G298900 Prunus persica HOM05D000048 ORTHO05D000445 2.1e-06 55.1 39 59.0
QL06p047742 Quercus lobata HOM05D000048 ORTHO05D000436 2.1e-06 55.1 43 55.8
GSVIVG01004077001 Vitis vinifera HOM05D000048 ORTHO05D000445 2.1e-06 55.1 47 51.1
Atru.chr13.1087 Acer truncatum HOM05D000048 ORTHO05D000436 2.8e-06 54.7 40 65.0
Actinidia30839 Actinidia chinensis HOM05D000048 ORTHO05D000436 2.8e-06 54.7 36 61.1
Cpa.g.sc55.57 Carica papaya HOM05D000048 ORTHO05D000436 2.8e-06 54.7 35 65.7
CiPaw.15G044100 Carya illinoinensis HOM05D000048 ORTHO05D000436 2.8e-06 54.7 47 48.9
Dinv20786 Davidia involucrata HOM05D000048 ORTHO05D000436 2.8e-06 54.7 39 61.5
Dinv20793 Davidia involucrata HOM05D000048 ORTHO05D000436 2.8e-06 54.7 39 61.5
Dinv20796 Davidia involucrata HOM05D000048 ORTHO05D000436 2.8e-06 54.7 39 61.5
Solyc03g025240.3 Solanum lycopersicum HOM05D000048 ORTHO05D000445 2.8e-06 54.7 39 56.4
Solyc03g025250.4 Solanum lycopersicum HOM05D000048 ORTHO05D000445 2.8e-06 54.7 53 45.3
Sopen03g004080 Solanum pennellii HOM05D000048 ORTHO05D000001 2.8e-06 54.7 53 45.3
arahy.Tifrunner.gnm1.ann1.BBQR41 Arachis hypogaea HOM05D000048 ORTHO05D000436 3.6e-06 54.3 35 65.7
arahy.Tifrunner.gnm1.ann1.SM4FP5 Arachis hypogaea HOM05D000048 ORTHO05D000436 3.6e-06 54.3 35 65.7
MSTRG.3644 Avicennia marina HOM05D000048 ORTHO05D000436 3.6e-06 54.3 38 57.9
AUR62003282 Chenopodium quinoa HOM05D000048 ORTHO05D000436 3.6e-06 54.3 36 61.1
Cc07_g14390 Coffea canephora HOM05D000048 ORTHO05D000436 3.6e-06 54.3 41 58.5
Oeu055129.1 Olea europaea HOM05D000048 ORTHO05D000436 3.6e-06 54.3 36 61.1
Sed0013173 Sechium edule HOM05D000048 ORTHO05D000445 3.6e-06 54.3 41 56.1
SEGI_32941 Sequoiadendron giganteum HOM05D000048 ORTHO05D000436 3.6e-06 54.3 47 48.9
Sc16g0000410 Simmondsia chinensis HOM05D000048 ORTHO05D000436 3.6e-06 54.3 35 65.7
AT1G11670 Arabidopsis thaliana HOM05D000048 ORTHO05D001179 4.7e-06 53.9 40 57.5
BcaB02g09895 Brassica carinata HOM05D000048 ORTHO05D000436 4.7e-06 53.9 35 62.9
BcaC04g19301 Brassica carinata HOM05D000048 ORTHO05D000436 4.7e-06 53.9 39 56.4
A10p27160 Brassica napus HOM05D000048 ORTHO05D000436 4.7e-06 53.9 39 56.4
C09p66960 Brassica napus HOM05D000048 ORTHO05D000436 4.7e-06 53.9 39 53.8
BraA10t44767Z Brassica rapa HOM05D000048 ORTHO05D000436 4.7e-06 53.9 39 56.4
Lalb_Chr16g0381851 Lupinus albus HOM05D000048 ORTHO05D000436 4.7e-06 53.9 39 61.5
Nitab4.5_0007098g0020 Nicotiana tabacum HOM05D000048 ORTHO05D000436 4.7e-06 53.9 35 62.9
Nitab4.5_0008467g0010 Nicotiana tabacum HOM05D000048 ORTHO05D000445 4.7e-06 53.9 37 56.8
RcHm_v2.0_Chr1g0378001 Rosa chinensis HOM05D000048 ORTHO05D000445 4.7e-06 53.9 39 59.0
Actinidia20009 Actinidia chinensis HOM05D000048 ORTHO05D000436 6.2e-06 53.5 35 62.9
COL.COLO4_11977 Corchorus olitorius HOM05D000048 ORTHO05D000436 6.2e-06 53.5 37 59.5
Haze_18241 Corylus avellana HOM05D000048 ORTHO05D000436 6.2e-06 53.5 47 44.7
MELO3C007730.2 Cucumis melo HOM05D000048 ORTHO05D000436 6.2e-06 53.5 35 62.9
Eucgr.B00056 Eucalyptus grandis HOM05D000048 ORTHO05D000436 6.2e-06 53.5 35 65.7
Thhalv10004087m.g Eutrema salsugineum HOM05D000048 ORTHO05D000436 6.2e-06 53.5 38 55.3
Glyma.04G097900 Glycine max HOM05D000048 ORTHO05D000436 6.2e-06 53.5 43 53.5
Nitab4.5_0001078g0110 Nicotiana tabacum HOM05D000048 ORTHO05D000436 6.2e-06 53.5 40 55.0
Potri.007G010200 Populus trichocarpa HOM05D000048 ORTHO05D000436 6.2e-06 53.5 35 65.7
CARHR279350 Cardamine hirsuta HOM05D000048 ORTHO05D000436 8.1e-06 53.1 38 57.9
Cfa004365 Carpinus fangiana HOM05D000048 ORTHO05D000436 8.1e-06 53.1 35 65.7
AUR62027186 Chenopodium quinoa HOM05D000048 ORTHO05D000436 8.1e-06 53.1 36 58.3
Haze_12193 Corylus avellana HOM05D000048 ORTHO05D000445 8.1e-06 53.1 52 46.2
Lj2g0002867 Lotus japonicus HOM05D000048 ORTHO05D000436 8.1e-06 53.1 43 55.8
Manes.12G129000 Manihot esculenta HOM05D000048 ORTHO05D000436 8.1e-06 53.1 35 62.9
Manes.13G097900 Manihot esculenta HOM05D000048 ORTHO05D000436 8.1e-06 53.1 35 62.9
Oeu045377.1 Olea europaea HOM05D000048 ORTHO05D000445 8.1e-06 53.1 42 47.6
RcHm_v2.0_Chr7g0237971 Rosa chinensis HOM05D000048 ORTHO05D000436 8.1e-06 53.1 45 55.6
Solyc03g025230.3 Solanum lycopersicum HOM05D000048 ORTHO05D000445 8.1e-06 53.1 39 53.8
Sopen03g004070 Solanum pennellii HOM05D000048 ORTHO05D000445 8.1e-06 53.1 39 53.8
PGSC0003DMG400032481 Solanum tuberosum HOM05D000048 ORTHO05D000445 8.1e-06 53.1 39 53.8
TAR628G1007 Trochodendron aralioides HOM05D000048 ORTHO05D000436 8.1e-06 53.1 33 72.7
VMungo1382G0001 Vigna mungo HOM05D000048 ORTHO05D000436 8.1e-06 53.1 43 55.8


User provided reference genes

Program Settings