Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 3696.4 1828 100.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2375.5 1835 64.3
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2309.3 1832 62.8
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2308.5 1856 62.6
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2302.3 1833 62.9
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2262.3 1840 61.8
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2240.3 1935 58.8
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2233.0 1838 60.1
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2216.0 1838 60.8
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2214.9 1833 60.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2213.0 1834 60.5
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2212.2 1837 60.7
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2212.2 1835 60.4
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2203.7 1945 57.7
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2192.5 1846 59.2
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2189.8 1839 59.5
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2179.4 1953 57.5
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2174.4 1838 59.8
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2169.8 1794 60.5
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2169.8 1837 59.7
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2159.4 1843 58.4
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2151.7 1842 58.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2151.3 1698 63.1
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2143.2 1951 56.8
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2142.9 1861 57.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2140.9 1849 58.0
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2139.0 1838 58.5
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2133.6 1840 58.4
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2127.8 1828 59.3
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2127.4 1833 58.1
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2127.1 1837 58.6
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2123.6 1835 58.3
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2121.7 1838 58.2
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2118.2 1840 58.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2116.7 1848 57.8
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2115.5 1837 58.6
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2113.6 1893 56.4
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2112.0 1970 55.8
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2112.0 1839 58.1
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2111.6 1835 58.0
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2107.4 1838 58.7
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2103.9 1840 58.0
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2102.4 1836 58.3
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2100.9 1851 57.9
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2097.4 1839 57.6
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2095.9 1877 57.1
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2095.1 1834 58.5
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2080.1 1835 58.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2077.4 1835 57.4
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2077.0 1830 57.4
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2068.1 1896 56.5
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2057.7 1838 56.7
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2047.7 1693 60.9
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2043.1 1841 56.2
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2042.7 1841 57.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2035.4 1841 56.7
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2035.4 1740 58.6
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2005.7 1839 56.4
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2004.2 1602 62.4
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2003.4 1738 58.8
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2002.6 1957 53.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1988.8 1835 55.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1970.7 1837 55.6
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 1964.5 1831 55.2
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1964.5 1836 55.4
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1956.4 1847 55.1
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1954.1 1853 54.7
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1952.2 1838 54.8
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1939.1 1840 54.7
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1931.4 1843 54.5
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1923.3 1838 54.5
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1920.6 1876 54.4
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1904.8 1832 54.0
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1903.3 1865 53.8
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1900.2 1843 53.8
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1896.3 1855 53.6
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1880.9 1864 53.3
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1872.1 1478 64.3
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1856.6 1837 52.9
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1845.1 1872 52.2
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1841.6 1752 55.3
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1831.6 1466 62.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1770.0 1852 51.4
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1762.7 1868 50.7
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1587.0 1518 54.9
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1548.9 1232 63.1
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1537.7 1933 46.0
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1535.4 1940 46.2
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1532.3 1219 62.2
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1478.4 1325 56.4
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1478.0 1764 47.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1476.5 1784 46.7
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1405.2 1409 52.6
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1345.9 977 68.9
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1249.2 1857 41.7
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1213.0 946 63.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1212.6 1047 58.2
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1195.6 1166 55.5
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1188.7 1215 52.7
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1182.9 1368 50.1
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1156.7 910 63.5
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 8.8e-311 1071.2 2130 35.4
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 1.1e-310 1070.8 788 67.8
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 1.8e-284 983.8 919 57.5
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 4.6e-248 862.8 906 50.2
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 3.9e-239 833.2 880 52.0
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 9.7e-222 775.4 801 48.7
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 4.1e-220 770.0 736 54.9
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 2.1e-200 704.5 517 67.1
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.0e-191 675.6 528 62.9
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.8e-189 667.5 524 63.5
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 3.7e-189 667.2 514 63.6
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 2.7e-179 634.4 877 43.2
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.9e-177 628.2 1079 37.3
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.1e-172 610.5 728 47.3
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 3.5e-171 607.4 639 50.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.6e-163 582.0 910 42.2
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.4e-157 560.1 574 54.9
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.4e-157 559.7 627 46.7
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 9.6e-137 493.0 427 58.8
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 1.5e-134 485.7 411 60.1
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 9.6e-129 466.5 324 69.8
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.0e-125 456.4 439 53.3
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 5.0e-117 427.6 312 67.6
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 2.1e-115 422.2 839 35.5
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.7e-112 412.5 537 43.4
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.0e-106 393.3 572 40.6
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 5.1e-106 391.0 373 53.4
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 2.2e-104 385.6 381 54.1
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.7e-96 358.2 429 49.7
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 7.0e-95 354.0 931 29.5
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.4e-87 329.7 309 53.7
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.7e-86 323.9 254 65.0
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 2.2e-80 305.8 186 80.6
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 7.0e-79 300.8 393 42.5
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.8e-74 286.2 335 44.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.0e-69 268.1 421 38.7
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 2.0e-65 256.1 309 44.3
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 4.3e-60 238.4 377 38.7
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.5e-44 186.8 231 45.5
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.2e-43 183.7 166 50.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 4.7e-43 181.8 226 43.4
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.1e-42 179.1 169 53.8
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.1e-38 166.4 216 44.0
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.5e-36 160.2 199 43.2
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 2.1e-35 156.4 147 55.8
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.4e-33 148.7 155 50.3
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.3e-32 147.1 133 54.9
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 3.8e-32 145.6 101 67.3
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 6.0e-30 138.3 300 32.7
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 6.0e-30 138.3 211 39.8
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 1.5e-28 133.7 163 44.2
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 5.6e-28 131.7 128 51.6
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 5.6e-28 131.7 168 40.5
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 3.6e-27 129.0 124 51.6
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 5.8e-25 121.7 110 60.0
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-24 120.6 103 56.3
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.8e-21 110.2 121 46.3
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 1.9e-20 106.7 90 53.3
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 3.7e-19 102.4 171 36.8
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 3.1e-18 99.4 125 48.8
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 5.3e-18 98.6 93 51.6
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 2.6e-17 96.3 147 44.2
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.8e-17 95.1 54 77.8
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 5.8e-17 95.1 140 40.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-14 86.7 81 49.4
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 3.5e-14 85.9 86 50.0
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 7.9e-14 84.7 137 37.2
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 1.0e-13 84.3 97 46.4
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 5.1e-13 82.0 166 34.3
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 7.4e-12 78.2 58 69.0
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 6.3e-11 75.1 138 34.1
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.8e-10 73.6 71 54.9
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 3.1e-10 72.8 119 37.8
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.1e-10 72.8 83 47.0
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 4.1e-10 72.4 71 46.5
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 2.9e-08 66.2 72 43.1
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.2e-07 62.8 61 50.8


User provided reference genes

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