Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.1e-156 556.6 283 100.0
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 7.9e-131 470.7 281 87.2
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 3.3e-113 412.1 257 80.2
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.1e-108 397.1 251 80.1
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 9.4e-108 394.0 257 75.9
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 6.1e-107 391.3 254 74.8
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 8.0e-107 391.0 249 78.3
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 5.2e-106 388.3 251 75.7
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 8.8e-106 387.5 257 74.3
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 8.8e-106 387.5 258 74.0
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 2.0e-105 386.3 257 73.5
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.6e-105 386.0 257 75.5
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 4.4e-105 385.2 247 77.7
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 4.4e-105 385.2 251 76.5
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 5.7e-105 384.8 251 75.3
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.3e-104 383.6 247 77.3
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 1.3e-104 383.6 257 73.2
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.7e-104 383.3 249 76.3
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 2.8e-104 382.5 257 73.5
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 2.8e-104 382.5 257 73.2
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 2.8e-104 382.5 251 74.1
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 3.7e-104 382.1 251 73.7
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 3.7e-104 382.1 251 73.7
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.7e-104 382.1 249 75.9
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 4.8e-104 381.7 251 74.9
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 8.2e-104 380.9 247 76.9
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 8.2e-104 380.9 257 73.9
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 1.1e-103 380.6 248 74.2
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 1.1e-103 380.6 247 75.7
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.8e-103 379.8 251 74.1
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 2.4e-103 379.4 249 76.3
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.1e-103 379.0 250 73.2
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 3.1e-103 379.0 251 74.9
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 3.1e-103 379.0 257 72.4
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 4.1e-103 378.6 258 73.3
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.3e-103 378.3 257 72.0
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 5.3e-103 378.3 250 73.2
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 5.3e-103 378.3 257 72.0
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 7.0e-103 377.9 250 72.8
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 7.0e-103 377.9 259 73.0
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 9.1e-103 377.5 251 73.3
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 9.1e-103 377.5 255 73.7
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 1.2e-102 377.1 253 73.5
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.2e-102 377.1 248 74.2
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.6e-102 376.7 257 71.6
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.0e-102 376.3 250 72.4
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.0e-102 376.3 251 73.3
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 2.0e-102 376.3 257 72.0
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 3.5e-102 375.6 250 72.0
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 3.5e-102 375.6 249 75.1
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 3.5e-102 375.6 254 72.0
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 5.9e-102 374.8 249 72.7
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 1.0e-101 374.0 263 72.2
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 1.3e-101 373.6 259 70.7
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 1.3e-101 373.6 249 72.3
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 1.3e-101 373.6 249 73.5
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.7e-101 373.2 255 73.3
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 1.7e-101 373.2 247 74.9
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 2.2e-101 372.9 256 71.5
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 2.9e-101 372.5 249 72.3
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 3.8e-101 372.1 249 73.9
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 3.8e-101 372.1 249 74.3
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 3.8e-101 372.1 255 72.2
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 6.5e-101 371.3 249 73.5
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.5e-101 371.3 249 73.5
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 1.1e-100 370.5 249 71.9
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.5e-100 370.2 249 71.9
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 3.2e-100 369.0 249 72.3
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 3.2e-100 369.0 247 74.1
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 3.2e-100 369.0 246 74.0
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 4.2e-100 368.6 248 73.0
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.2e-100 368.6 249 73.1
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 5.5e-100 368.2 257 71.6
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 9.4e-100 367.5 247 74.1
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 1.2e-99 367.1 247 73.3
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.6e-99 366.7 252 73.0
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 2.1e-99 366.3 244 73.8
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 2.7e-99 365.9 257 71.2
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 2.7e-99 365.9 251 70.5
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.7e-99 365.2 249 72.7
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.0e-98 364.0 249 72.3
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.8e-98 363.2 255 69.8
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 2.3e-98 362.8 231 76.2
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 3.0e-98 362.5 247 72.1
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 6.8e-98 361.3 251 71.3
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 6.8e-98 361.3 252 71.8
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 8.8e-98 360.9 255 67.8
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 8.8e-98 360.9 251 72.1
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.2e-97 360.5 252 70.6
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.5e-97 360.1 235 75.3
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 2.0e-97 359.8 252 70.6
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.6e-97 359.4 259 69.1
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.6e-97 359.4 261 69.3
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.4e-97 359.0 253 70.4
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 9.8e-97 357.5 251 70.5
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 9.8e-97 357.5 229 75.5
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.3e-96 357.1 251 70.5
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.3e-96 357.1 258 70.2
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 1.7e-96 356.7 251 71.3
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 2.2e-96 356.3 258 69.0
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.2e-96 356.3 253 67.6
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 2.2e-96 356.3 251 70.5
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 2.8e-96 355.9 276 67.0
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 8.3e-96 354.4 235 75.3
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.4e-95 353.6 258 68.2
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.4e-95 353.6 292 63.0
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 2.4e-95 352.8 258 69.0
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 1.2e-94 350.5 249 71.1
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 4.5e-94 348.6 250 69.6
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 7.7e-94 347.8 229 73.8
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 6.5e-93 344.7 230 73.5
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 8.0e-91 337.8 226 73.9
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 8.0e-91 337.8 223 74.4
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 1.2e-89 334.0 243 66.3
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.9e-84 316.6 245 66.1
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 9.2e-79 297.7 175 81.7
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 7.8e-78 294.7 242 62.0
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 3.0e-77 292.7 176 80.7
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 3.9e-77 292.4 245 63.3
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 5.6e-76 288.5 241 58.1
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 1.6e-75 287.0 241 62.7
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 1.4e-74 283.9 226 65.0
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.2e-74 282.0 239 61.1
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 2.2e-72 276.6 177 75.7
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.4e-71 273.1 176 73.9
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 6.6e-69 265.0 251 55.4
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 3.1e-66 256.1 209 63.6
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.5e-65 253.8 235 58.3
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 9.9e-65 251.1 176 67.6
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 7.8e-62 241.5 253 52.2
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.9e-61 239.2 257 51.4
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 1.7e-56 223.8 242 49.2
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 1.0e-53 214.5 252 47.2
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 2.3e-53 213.4 260 46.9
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 3.9e-53 212.6 161 63.4
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 3.9e-53 212.6 251 47.0
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 4.4e-49 199.1 131 74.0
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 7.8e-46 188.3 111 82.9
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 5.6e-44 182.2 188 53.2
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 2.1e-30 137.1 111 62.2
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 7.9e-22 108.6 70 70.0
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 1.2e-17 94.7 185 36.8
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.0e-17 94.0 122 48.4
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 2.4e-10 70.5 44 70.5
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 4.1e-10 69.7 62 53.2
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 4.5e-09 66.2 43 65.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.2e-06 58.2 227 26.0
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 2.1e-06 57.4 252 24.2
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 4.7e-06 56.2 159 28.3


User provided reference genes

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