Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G109 Amborella trichopoda HOM05D003008 ORTHO05D003346 2.2e-54 215.3 103 100.0
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 1.7e-30 136.0 91 73.6
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 9.5e-26 120.2 89 65.2
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 9.5e-26 120.2 89 65.2
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 1.6e-25 119.4 89 65.2
Os06g0671700 Oryza sativa ssp. japonica HOM05D003008 ORTHO05D003346 3.6e-25 118.2 90 64.4
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 3.6e-25 118.2 90 63.3
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 4.7e-25 117.9 90 62.2
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 6.2e-25 117.5 89 62.9
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 1.1e-24 116.7 89 64.0
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 1.8e-24 115.9 92 62.0
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 1.8e-24 115.9 90 63.3
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.8e-24 115.9 90 63.3
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 1.8e-24 115.9 90 62.2
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 1.8e-24 115.9 90 64.4
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 2.4e-24 115.5 89 64.0
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 2.4e-24 115.5 90 62.2
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 3.1e-24 115.2 90 62.2
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 3.1e-24 115.2 90 62.2
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 3.1e-24 115.2 89 65.2
Ah.09g232330 Amaranthus hybridus HOM05D000070 ORTHO05D003346 5.2e-24 114.4 90 62.2
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 5.2e-24 114.4 91 60.4
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 6.8e-24 114.0 90 63.3
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 6.8e-24 114.0 90 62.2
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 6.8e-24 114.0 91 60.4
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 8.9e-24 113.6 89 62.9
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 8.9e-24 113.6 89 62.9
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 8.9e-24 113.6 90 60.0
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 1.2e-23 113.2 89 61.8
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 1.2e-23 113.2 90 62.2
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 1.5e-23 112.8 90 62.2
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 1.5e-23 112.8 90 62.2
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 2.0e-23 112.5 90 61.1
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 2.0e-23 112.5 90 62.2
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 2.0e-23 112.5 90 62.2
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 2.0e-23 112.5 89 60.7
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 2.6e-23 112.1 90 58.9
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 2.6e-23 112.1 90 62.2
SHI24823 Sapria himalayana HOM05D003008 ORTHO05D003346 2.6e-23 112.1 89 61.8
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 3.4e-23 111.7 90 61.1
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 3.4e-23 111.7 90 61.1
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 3.4e-23 111.7 90 58.9
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 3.4e-23 111.7 91 59.3
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 4.4e-23 111.3 90 60.0
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 4.4e-23 111.3 91 59.3
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 4.4e-23 111.3 89 59.6
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 4.4e-23 111.3 92 59.8
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 4.4e-23 111.3 89 62.9
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 5.8e-23 110.9 90 61.1
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 5.8e-23 110.9 90 60.0
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 7.6e-23 110.5 90 61.1
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 7.6e-23 110.5 90 58.9
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 7.6e-23 110.5 90 60.0
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 9.9e-23 110.2 89 58.4
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 9.9e-23 110.2 89 58.4
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 9.9e-23 110.2 93 57.0
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 9.9e-23 110.2 90 60.0
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 9.9e-23 110.2 89 60.7
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 1.3e-22 109.8 89 59.6
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 1.3e-22 109.8 89 61.8
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 1.3e-22 109.8 90 60.0
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 1.3e-22 109.8 90 61.1
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 1.3e-22 109.8 90 61.1
arahy.Tifrunner.gnm1.ann1.447SJP Arachis hypogaea HOM05D003008 ORTHO05D003346 1.7e-22 109.4 90 61.1
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 1.7e-22 109.4 90 57.8
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 2.2e-22 109.0 90 60.0
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 2.9e-22 108.6 90 61.1
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 2.9e-22 108.6 90 60.0
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 2.9e-22 108.6 90 57.8
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 4.9e-22 107.8 89 58.4
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 4.9e-22 107.8 89 58.4
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 4.9e-22 107.8 90 57.8
Atru.chr2.1568 Acer truncatum HOM05D003008 ORTHO05D003346 6.4e-22 107.5 89 58.4
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 1.1e-21 106.7 91 58.2
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 1.4e-21 106.3 89 59.6
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 1.4e-21 106.3 89 59.6
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 1.4e-21 106.3 89 59.6
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 1.4e-21 106.3 89 59.6
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 1.4e-21 106.3 89 59.6
DCAR_000835 Daucus carota HOM05D003008 ORTHO05D003346 1.4e-21 106.3 90 57.8
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 1.4e-21 106.3 90 55.6
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 2.4e-21 105.5 68 69.1
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 2.4e-21 105.5 90 56.7
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 4.2e-21 104.8 89 59.6
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 5.4e-21 104.4 92 56.5
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 9.2e-21 103.6 89 56.2
Pp3c12_26070 Physcomitrium patens HOM05D003008 ORTHO05D003346 9.2e-21 103.6 89 52.8
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.6e-20 102.8 92 55.4
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 1.6e-20 102.8 89 57.3
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 1.6e-20 102.8 90 54.4
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 2.1e-20 102.4 89 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1205 Anthoceros agrestis HOM05D003008 ORTHO05D003346 2.7e-20 102.1 89 57.3
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 4.6e-20 101.3 90 55.6
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 4.6e-20 101.3 90 55.6
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 4.6e-20 101.3 90 54.4
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 1.0e-19 100.1 79 64.6
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.3e-19 99.8 92 52.2
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 3.0e-19 98.6 90 55.6
CBR_g38556 Chara braunii HOM05D003008 ORTHO05D003346 1.9e-18 95.9 95 47.4
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 1.9e-18 95.9 90 52.2
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 2.5e-18 95.5 68 64.7
CBR_g16946 Chara braunii HOM05D003008 ORTHO05D003346 3.3e-18 95.1 95 47.4
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 1.6e-17 92.8 90 55.6
PRCOL_00000580 Prasinoderma coloniale HOM05D003008 ORTHO05D003346 4.8e-17 91.3 83 56.6
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 9.0e-16 87.0 58 69.0
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 1.2e-15 86.7 90 45.6
Cre12.g514950 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 3.4e-15 85.1 97 44.3
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 2.2e-14 82.4 82 52.4
Haze_13591 Corylus avellana HOM05D003008 ORTHO05D003346 6.4e-14 80.9 124 38.7
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 1.1e-13 80.1 73 54.8
BcaB03g13821 Brassica carinata HOM05D003008 ORTHO05D003346 7.1e-13 77.4 81 48.1
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 9.3e-13 77.0 48 72.9
SGA_v2.0_scaffold1G00291 Striga asiatica HOM05D003008 ORTHO05D003346 9.3e-13 77.0 67 53.7
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 1.6e-12 76.3 73 53.4
Pp3c21_10530 Physcomitrium patens HOM05D003008 ORTHO05D003346 2.1e-12 75.9 73 49.3
Pp3c21_10540 Physcomitrium patens HOM05D003008 ORTHO05D003346 2.1e-12 75.9 73 49.3
Nitab4.5_0002005g0080 Nicotiana tabacum HOM05D003008 ORTHO05D003346 4.8e-09 64.7 38 76.3


User provided reference genes

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