Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1906.0 955 100.0
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1342.8 928 72.5
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1326.2 900 73.8
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1305.4 905 73.3
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1301.2 909 72.3
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1300.0 916 71.8
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1297.3 899 72.6
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1297.3 923 70.6
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1296.6 933 70.3
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1292.3 901 72.0
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1290.8 936 70.0
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1286.6 931 69.6
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1278.5 917 70.3
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 901 70.8
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1274.2 920 70.0
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1273.5 889 71.5
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1272.3 898 71.8
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1271.5 904 71.1
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1270.8 916 70.4
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1269.2 909 71.3
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1269.2 927 70.0
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1269.2 901 70.9
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1268.8 904 71.0
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1267.7 946 68.8
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1267.3 889 71.3
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1266.9 909 71.3
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1265.4 904 70.2
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1264.2 909 70.7
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1263.8 992 66.2
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1263.1 931 69.5
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1262.7 944 68.4
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1262.7 970 67.1
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1262.7 918 69.4
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1259.6 904 70.8
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1259.2 901 71.3
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1258.4 897 70.2
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1256.1 882 71.3
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1256.1 881 71.5
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1255.4 909 69.9
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1254.2 911 69.7
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1251.9 933 68.2
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1250.7 938 67.5
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1248.4 887 70.2
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1248.4 924 68.4
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1247.6 960 66.2
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1247.3 921 68.6
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1245.0 916 69.4
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1243.0 887 69.7
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1240.3 900 69.2
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1233.8 909 69.9
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1227.2 942 67.3
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1223.0 904 68.6
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1221.5 921 66.9
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1219.9 895 70.1
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1219.9 936 67.0
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1219.1 887 69.7
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1218.8 922 68.4
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1218.0 945 67.1
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 895 67.0
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1204.1 908 68.7
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1202.2 958 65.9
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1199.1 989 64.5
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1183.3 1017 61.8
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1183.3 866 67.2
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 929 66.1
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1173.3 902 67.7
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1165.6 880 66.1
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1165.2 924 64.7
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1164.4 815 72.3
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1163.3 963 64.0
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1158.3 881 66.6
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1153.7 828 69.7
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1147.5 913 64.6
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1146.0 904 64.6
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1143.6 885 65.5
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1140.6 915 64.5
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1140.6 882 65.2
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1136.7 805 70.4
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1136.3 902 64.6
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1133.2 923 64.2
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1133.2 920 63.6
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1132.5 902 64.7
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1129.8 904 63.2
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1122.8 878 64.9
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1122.8 932 63.7
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1114.4 882 63.9
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1109.0 936 63.1
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1101.7 887 63.8
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1101.3 879 64.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1100.9 883 63.4
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1091.6 898 62.9
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1081.6 899 63.6
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 3.1e-304 1048.5 812 65.4
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.6e-300 1036.2 911 61.6
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 3.5e-271 938.7 893 54.2
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.5e-269 933.3 767 63.4
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.5e-266 923.3 900 53.1
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.4e-259 900.2 749 62.3
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 9.5e-237 824.3 602 69.6
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 2.9e-233 812.8 678 63.9
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.9e-232 810.1 613 68.4
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.6e-228 797.0 596 69.3
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 2.7e-223 779.6 632 64.7
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 6.4e-217 758.4 934 46.8
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 7.9e-199 698.4 524 68.3
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 9.0e-195 684.9 555 64.0
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.6e-191 674.1 628 57.0
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 3.9e-190 669.5 932 44.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 3.8e-185 652.9 726 48.9
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.6e-183 647.5 445 71.9
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 2.5e-176 623.6 532 61.7
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 7.2e-168 595.5 401 71.8
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.3e-156 558.1 398 68.8
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 2.2e-124 451.1 339 68.4
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.0e-113 415.6 266 77.4
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 3.1e-102 377.5 277 66.8
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 1.2e-98 365.5 261 69.7
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.1e-87 328.2 342 55.6
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 4.5e-85 320.5 216 75.0
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 3.5e-74 284.3 238 60.1
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 6.7e-65 253.4 172 70.3
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 5.5e-59 233.8 273 46.5
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 8.2e-55 219.9 216 51.9
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.5e-43 180.6 262 46.9
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.5e-36 157.1 206 50.5
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.7e-31 142.5 98 71.4
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.3e-23 116.3 63 85.7
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 2.2e-23 115.5 459 24.6
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.4e-22 112.8 82 67.1
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-22 112.5 272 30.9
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.3e-17 95.5 55 83.6
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 2.4e-14 85.5 71 63.4
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 4.3e-11 74.7 280 27.9
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 2.4e-06 58.9 52 59.6


User provided reference genes

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