Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.9e-131 473.0 334 100.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.2e-72 277.7 339 47.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.5e-72 275.0 341 47.5
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.7e-71 272.7 339 45.4
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 5.4e-70 268.9 339 45.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 5.4e-70 268.9 340 44.7
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.0e-69 266.9 339 46.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.7e-69 266.5 339 45.4
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 3.5e-69 266.2 339 45.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 3.5e-69 266.2 336 46.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.6e-69 265.8 339 46.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.0e-69 265.4 339 44.5
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.3e-68 264.2 339 46.3
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.3e-68 264.2 339 45.4
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 6.6e-68 261.9 339 46.3
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-67 261.2 339 45.7
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.5e-67 260.8 339 44.0
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.9e-67 260.4 339 46.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 3.3e-67 259.6 335 46.0
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 9.5e-67 258.1 338 43.8
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-66 257.3 339 43.7
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.1e-66 256.9 338 43.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.7e-66 255.8 339 43.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.7e-66 255.8 338 43.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 8.1e-66 255.0 332 45.5
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-65 254.6 338 45.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.8e-65 253.8 339 43.4
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.0e-65 252.7 332 45.2
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 8.9e-65 251.5 338 43.8
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 8.9e-65 251.5 340 53.2
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-64 251.1 339 43.7
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.2e-64 251.1 338 44.4
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.0e-64 250.4 338 43.5
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-64 250.0 338 43.5
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-64 250.0 338 43.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.4e-64 249.2 340 52.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.8e-64 248.8 335 42.4
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 7.5e-64 248.4 339 43.1
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 9.8e-64 248.1 337 43.6
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.2e-63 246.9 335 43.3
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.2e-63 246.9 340 42.9
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 2.9e-63 246.5 341 43.4
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.9e-63 246.5 334 44.6
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.7e-63 246.1 339 42.2
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 6.4e-63 245.4 339 41.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 8.3e-63 245.0 340 43.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.1e-62 244.6 342 43.3
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.1e-62 244.6 339 41.6
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.4e-62 244.2 338 43.2
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 2.4e-62 243.4 339 43.4
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.2e-62 243.0 340 41.2
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.2e-61 241.1 332 43.1
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.5e-61 239.6 339 41.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 6.0e-61 238.8 342 42.7
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.9e-60 236.1 339 43.4
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.5e-59 233.4 313 42.5
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.3e-59 233.0 340 40.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 4.3e-59 232.6 340 41.2
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.2e-58 231.1 339 44.8
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.1e-58 230.3 339 48.1
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.8e-58 229.9 336 40.8
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.7e-58 229.2 339 44.5
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 4.7e-58 229.2 367 40.1
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 6.2e-58 228.8 316 44.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.1e-57 228.0 332 43.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.0e-57 226.1 340 41.5
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.9e-57 224.9 338 47.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-56 224.2 339 46.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.0e-56 223.8 339 49.9
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 4.4e-56 222.6 340 40.9
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.4e-56 222.6 321 42.7
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.8e-55 219.5 338 47.6
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 8.4e-55 218.4 335 43.3
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.1e-54 216.1 338 47.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 4.1e-54 216.1 320 42.5
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 7.1e-54 215.3 335 48.4
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.2e-53 214.5 337 52.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.8e-53 211.8 339 39.2
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.0e-52 211.5 333 42.9
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.7e-52 210.7 316 42.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.7e-52 210.7 340 40.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 2.3e-52 210.3 345 39.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.3e-52 210.3 331 39.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.0e-52 209.9 336 41.1
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.9e-51 207.2 339 42.2
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 4.3e-51 206.1 388 42.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 4.3e-51 206.1 343 49.9
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.6e-50 203.0 292 41.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.1e-49 201.4 339 41.9
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 6.9e-49 198.7 339 42.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.2e-48 198.0 286 40.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.5e-48 197.6 333 38.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.0e-48 197.2 333 44.1
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.4e-48 196.4 339 42.2
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.4e-48 196.4 339 42.2
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 5.8e-48 195.7 339 40.7
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.6e-48 195.3 335 41.8
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 9.9e-48 194.9 339 44.5
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.9e-47 193.4 338 43.2
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 3.2e-46 189.9 335 36.1
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.2e-46 189.9 284 42.3
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.4e-46 189.1 331 45.3
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 7.1e-46 188.7 335 43.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.7e-45 186.8 339 51.3
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 6.6e-44 182.2 339 40.7
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.9e-43 180.6 334 35.3
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 4.8e-42 176.0 306 38.2
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 8.1e-42 175.3 362 39.2
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 9.0e-41 171.8 339 36.3
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.2e-40 171.4 338 52.4
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.5e-40 171.0 329 36.8
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.0e-40 170.6 339 34.5
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.7e-39 167.5 261 36.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.8e-39 166.4 338 34.6
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.1e-38 164.9 348 32.8
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.6e-37 161.0 341 33.4
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.1e-37 160.6 288 39.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 3.5e-37 159.8 322 37.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.8e-36 157.5 319 35.7
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.0e-36 156.8 339 33.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.8e-34 150.2 338 32.5
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.8e-34 150.2 276 37.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.6e-34 149.8 314 36.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 5.3e-33 146.0 289 34.6
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.9e-33 145.6 319 33.2
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.2e-32 144.8 180 47.8
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-32 144.1 314 34.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-32 144.1 314 34.1
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.4e-32 143.3 317 33.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 4.5e-32 142.9 314 33.8
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 9.9e-32 141.7 314 33.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.2e-31 140.6 157 49.0
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 8.4e-31 138.7 339 35.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.2e-30 136.7 280 36.4
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.5e-29 133.3 305 34.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.0e-28 131.7 291 33.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.0e-28 130.2 280 35.4
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.9e-27 127.5 308 32.5
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.3e-27 126.3 285 35.1
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.8e-26 123.6 305 31.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.7e-26 123.2 320 30.6
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.8e-26 122.9 324 31.8
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.8e-25 120.9 308 31.5
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.6e-24 117.1 329 30.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-23 115.2 278 33.5
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.8e-23 113.2 314 29.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.9e-23 112.8 311 30.2
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.4e-22 111.3 311 28.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.5e-22 110.5 311 37.6
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.2e-22 110.2 204 36.8
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.6e-21 107.8 297 31.3
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-21 107.5 275 31.6
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.6e-21 106.3 306 38.6
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-20 104.4 307 29.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 5.1e-20 102.8 287 31.4
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.1e-18 97.4 290 31.4
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.0e-16 90.9 262 29.0
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 7.2e-14 82.4 69 62.3
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 6.1e-13 79.3 305 36.7
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.3e-10 71.6 248 28.2
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.2e-10 70.9 62 64.5
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.6e-08 63.9 227 27.8
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 5.9e-08 62.8 286 38.1
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.0e-07 62.0 53 62.3
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.5e-07 59.3 53 64.2
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.4e-06 58.2 50 64.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.9e-06 57.8 156 32.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.9e-06 57.8 56 53.6
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.2e-06 56.6 306 25.5


User provided reference genes

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