Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1419.1 722 100.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 731 78.4
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1128.2 730 78.4
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1111.3 727 77.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1110.1 734 77.4
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1108.6 734 77.1
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1094.7 727 76.5
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1089.7 730 76.2
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 729 75.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1082.4 736 75.1
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1080.5 741 75.0
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 738 75.1
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 725 75.7
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1077.8 731 75.5
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1077.4 721 76.7
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.9e-312 1074.7 741 74.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 4.9e-312 1074.7 729 75.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 4.9e-312 1074.3 729 75.7
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.9e-312 1073.5 738 74.9
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.0e-311 1072.0 729 75.7
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.5e-311 1071.6 739 75.4
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 4.4e-311 1070.8 739 74.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 9.9e-311 1069.7 729 75.7
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 2.2e-310 1068.5 737 73.9
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 2.9e-310 1068.1 725 75.3
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.9e-310 1067.4 725 74.8
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.4e-310 1067.0 726 74.8
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.1e-309 1066.2 733 74.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.1e-309 1066.2 738 74.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.2e-309 1064.7 719 75.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 5.4e-309 1063.9 724 74.6
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.6e-308 1060.8 719 74.8
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 1.0e-307 1059.7 719 75.2
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 3.0e-307 1058.1 734 74.4
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 5.0e-307 1057.4 724 72.8
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 8.6e-307 1056.6 717 74.9
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.1e-306 1056.2 725 74.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 1.9e-306 1055.4 727 73.6
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.9e-306 1055.4 725 73.7
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.9e-306 1055.4 727 74.6
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 4.4e-303 1044.3 715 74.7
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 9.9e-303 1043.1 732 73.5
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 2.9e-302 1041.6 726 72.9
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 2.9e-302 1041.6 740 72.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 6.4e-302 1040.4 714 74.8
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 4.1e-301 1037.7 702 76.2
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.6e-300 1035.8 732 72.8
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.7e-300 1035.0 775 69.9
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.7e-299 1032.3 728 73.2
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 2.3e-299 1031.9 730 71.9
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.0e-299 1031.6 699 75.1
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 1.1e-298 1029.6 723 71.0
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.5e-295 1019.2 648 79.8
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 5.8e-295 1017.3 744 70.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 8.4e-294 1013.4 723 72.3
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 8.4e-294 1013.4 723 72.3
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 1.1e-293 1013.1 723 72.8
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 7.8e-292 1006.9 766 69.3
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 5.1e-291 1004.2 730 70.4
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 6.6e-291 1003.8 728 71.6
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 8.7e-291 1003.4 793 67.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 7.3e-290 1000.3 726 71.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 7.3e-290 1000.3 723 71.1
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.8e-289 998.4 740 69.7
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 6.2e-289 997.3 721 71.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.4e-288 996.1 724 71.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.8e-288 995.7 714 70.3
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.3e-286 989.6 733 70.0
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 3.8e-286 988.0 724 70.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 7.1e-285 983.8 679 74.1
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 2.1e-284 982.2 724 69.8
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.0e-283 979.9 721 70.2
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 8.7e-283 976.9 712 70.8
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.3e-281 973.0 726 70.2
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.6e-281 972.6 723 69.4
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 5.4e-277 957.6 754 65.5
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 9.3e-277 956.8 674 72.8
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 4.6e-276 954.5 673 72.8
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.3e-275 952.2 728 67.0
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 9.6e-274 946.8 753 64.9
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 9.6e-274 946.8 754 65.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.6e-273 946.0 726 66.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.6e-273 946.0 726 66.5
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.7e-273 944.9 729 67.2
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.8e-272 942.6 743 65.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.4e-272 942.2 743 65.5
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 3.1e-272 941.8 744 65.5
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 5.3e-272 941.0 740 65.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 6.9e-272 940.6 694 69.9
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 3.8e-270 934.9 721 66.2
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 4.9e-270 934.5 720 66.4
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 6.4e-270 934.1 720 66.2
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 8.4e-270 933.7 721 66.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.4e-269 932.2 732 65.4
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 9.6e-266 920.2 718 68.2
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 2.1e-260 902.5 685 67.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 7.4e-234 814.3 756 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.6e-231 806.6 715 58.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 8.5e-230 800.8 541 73.8
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.5e-229 799.3 541 73.4
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.2e-225 786.2 724 57.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 9.4e-221 770.8 576 71.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.7e-220 769.2 714 56.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 2.6e-218 762.7 719 57.4
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.8e-217 759.2 572 64.3
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 5.2e-211 738.4 531 66.7
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 3.5e-207 725.7 531 66.3
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 9.8e-194 681.0 511 65.9
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.2e-184 649.4 414 77.3
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 3.3e-173 612.8 403 77.2
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-163 581.3 414 67.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 3.8e-145 519.6 343 76.7
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.8e-132 476.9 269 85.1
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.9e-104 384.4 684 37.7
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 7.5e-101 372.5 491 43.4
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 9.2e-91 339.0 293 62.5
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.8e-86 322.8 280 58.2
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.0e-82 311.2 630 39.0
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.4e-70 271.9 274 57.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.2e-67 260.8 733 30.0
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.5e-64 251.1 351 45.6
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.0e-41 176.0 99 81.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.3e-36 159.1 83 88.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.5e-24 119.0 147 48.3
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-23 115.5 110 55.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.8e-23 114.8 135 48.1
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.8e-22 112.1 124 50.8
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.8e-20 104.4 54 85.2
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 5.5e-19 100.5 103 51.5
ATR0498G005 Amborella trichopoda HOM05D035709 ORTHO05D064584 1.3e-15 89.4 53 84.9
ATR0762G021 Amborella trichopoda HOM05D035709 ORTHO05D067823 1.3e-15 89.4 58 77.6
ATR1096G122 Amborella trichopoda HOM05D035709 ORTHO05D062484 1.2e-10 72.8 45 84.4
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 4.7e-10 70.9 41 80.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-09 67.8 60 58.3
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.4e-08 64.3 81 46.9
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 9.7e-08 63.2 76 50.0
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-06 59.7 364 24.5
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 1.1e-06 59.7 99 39.4


User provided reference genes

Program Settings