Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 3.7e-130 469.5 586 100.0
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.5e-83 314.7 586 81.2
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.3e-82 311.6 584 70.9
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.8e-82 310.5 583 79.2
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 2.8e-82 310.5 584 72.6
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 1.1e-81 308.5 584 75.2
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.4e-81 307.4 584 81.2
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.3e-81 306.2 585 69.1
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 5.9e-80 302.8 584 73.5
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.0e-79 302.0 584 77.9
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.7e-79 301.2 583 72.7
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 2.2e-79 300.8 583 72.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.9e-79 300.4 628 75.2
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 3.8e-79 300.1 583 70.7
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.9e-78 297.7 584 72.8
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 3.2e-78 297.0 584 75.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 3.2e-78 297.0 585 81.0
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 5.5e-78 296.2 590 73.9
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 9.4e-78 295.4 584 70.0
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.2e-77 295.0 590 71.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.2e-77 295.0 583 66.4
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.0e-76 292.0 584 66.6
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 1.4e-76 291.6 585 70.1
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 4.0e-76 290.0 584 78.3
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.8e-76 289.3 583 79.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.5e-75 288.1 583 80.8
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 3.4e-75 287.0 584 78.9
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 3.4e-75 287.0 584 81.7
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 4.4e-75 286.6 584 65.4
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 4.4e-75 286.6 565 77.7
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 9.8e-75 285.4 583 80.6
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.3e-74 285.0 584 74.3
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.7e-74 284.6 583 77.2
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.8e-74 283.9 583 70.2
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.8e-74 283.9 584 81.0
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 6.3e-74 282.7 584 71.9
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.4e-73 281.6 586 63.3
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.4e-73 281.6 586 67.4
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.4e-73 280.8 597 72.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 7.0e-73 279.3 584 70.0
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.6e-72 278.1 584 69.7
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.3e-71 275.0 597 72.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.1e-70 271.9 584 67.8
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.9e-70 271.2 583 72.2
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 7.2e-70 269.2 585 73.8
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 4.7e-69 266.5 583 72.4
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.3e-68 264.2 587 79.2
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 5.2e-68 263.1 583 71.5
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.2e-67 261.9 583 72.4
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.5e-67 261.5 583 70.0
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 2.8e-66 257.3 584 72.4
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 4.9e-66 256.5 563 77.6
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.2e-64 251.9 584 65.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 7.8e-64 249.2 501 73.1
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 7.8e-64 249.2 583 67.1
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 7.8e-64 249.2 584 67.6
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.0e-63 248.8 584 65.8
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.0e-63 248.8 584 62.7
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.7e-63 248.1 583 64.3
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.7e-63 248.1 600 72.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 2.3e-63 247.7 588 65.0
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 6.6e-63 246.1 583 64.3
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.5e-62 245.0 584 66.1
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 7.3e-62 242.7 359 79.7
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 9.5e-62 242.3 564 77.7
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.2e-61 241.9 500 70.8
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 8.0e-61 239.2 576 56.4
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 8.0e-61 239.2 314 71.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.4e-60 238.4 585 49.2
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 5.2e-60 236.5 594 64.1
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 3.4e-59 233.8 317 60.6
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 2.2e-58 231.1 586 63.3
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 6.4e-58 229.6 592 59.5
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 2.4e-57 227.6 556 62.8
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 5.4e-57 226.5 564 71.6
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.2e-56 225.3 584 64.0
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 3.5e-56 223.8 684 63.5
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 4.6e-56 223.4 436 75.2
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 7.8e-56 222.6 590 61.9
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.0e-55 222.2 594 62.8
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.1e-54 218.8 436 65.1
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.6e-53 214.9 600 60.2
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 2.1e-53 214.5 583 64.8
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.4e-49 201.8 583 65.9
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 7.0e-49 199.5 565 62.3
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 3.5e-48 197.2 502 65.5
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.0e-47 195.7 588 64.8
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.3e-47 195.3 644 55.4
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.1e-46 192.2 564 62.8
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 9.5e-46 189.1 436 70.4
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 6.2e-45 186.4 577 64.1
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.4e-41 174.5 234 55.6
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.6e-40 171.8 562 66.0
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.8e-40 169.5 313 51.8
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 7.8e-40 169.5 594 58.4
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 5.6e-38 163.3 221 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.6e-37 160.6 593 52.4
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 8.1e-37 159.5 561 33.5
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 6.8e-36 156.4 586 65.5
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 3.2e-33 147.5 543 66.1
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 3.3e-30 137.5 560 50.7
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.4e-28 132.1 297 47.1
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 9.0e-28 129.4 143 54.5
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 8.4e-26 122.9 75 80.0
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 3.5e-24 117.5 75 74.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 3.5e-24 117.5 75 74.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.0e-23 115.9 75 73.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.7e-23 115.2 198 58.1
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 2.3e-23 114.8 75 73.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.0e-20 104.0 98 55.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.2e-19 102.4 98 57.1
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.1e-17 95.9 131 43.5
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.9e-17 95.1 69 66.7
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.7e-15 86.7 83 56.6
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.5e-14 85.5 60 60.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.3e-13 82.4 75 49.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 6.2e-13 80.1 53 66.0
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 2.4e-12 78.2 98 74.5
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 6.9e-12 76.6 98 72.4
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 3.4e-11 74.3 58 60.3
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 4.5e-11 73.9 102 78.4
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 4.5e-11 73.9 102 78.4
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 4.5e-11 73.9 102 78.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 3.8e-10 70.9 43 81.4
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.5e-08 64.3 44 72.7
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.1e-06 59.3 39 74.4
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.9e-06 58.5 75 41.3


User provided reference genes

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