Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 6.1e-240 833.9 482 100.0
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 3.3e-44 183.7 484 36.4
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.8e-29 134.8 532 29.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.3e-28 130.6 410 34.4
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.3e-28 130.6 546 29.5
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.6e-27 128.3 455 33.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 4.0e-26 123.6 586 28.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 9.0e-26 122.5 497 30.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.5e-25 121.7 505 30.7
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 3.4e-25 120.6 502 29.5
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 5.8e-25 119.8 535 28.4
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 7.6e-25 119.4 415 34.5
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 7.6e-25 119.4 427 30.2
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.2e-24 117.9 545 29.7
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.8e-24 117.1 395 30.4
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 6.0e-22 109.8 576 27.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.5e-20 105.1 491 30.3
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.9e-20 104.8 457 31.9
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.5e-20 104.4 601 26.5
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.5e-20 104.4 491 30.3
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 9.6e-20 102.4 279 34.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.6e-19 101.7 526 29.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.7e-19 100.5 473 28.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.1e-18 99.0 551 27.8
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.8e-18 98.2 361 31.3
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.1e-18 97.4 561 27.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 5.3e-18 96.7 425 30.1
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 6.9e-18 96.3 377 28.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 9.0e-18 95.9 550 26.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.2e-17 95.5 319 33.2
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.5e-17 95.1 411 28.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.0e-17 94.7 555 27.2
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.0e-17 94.7 555 27.2
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.0e-17 94.7 265 34.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.4e-17 94.0 607 26.5
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.5e-17 93.6 364 30.8
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 7.6e-17 92.8 267 33.3
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.7e-16 91.7 327 31.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.7e-16 91.7 260 33.8
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.7e-16 91.7 546 26.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.2e-16 91.3 319 31.7
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.5e-16 89.7 274 33.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 6.5e-16 89.7 482 27.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.4e-15 88.6 289 32.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.5e-15 87.8 317 31.9
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.5e-15 87.8 524 27.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.5e-15 87.8 562 25.1
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.5e-15 87.8 312 31.4
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.2e-15 87.0 241 32.0
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 9.3e-15 85.9 351 27.9
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.1e-14 84.7 329 30.7
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.5e-14 84.0 430 27.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.5e-14 84.0 430 27.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 6.1e-14 83.2 554 26.2
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.1e-14 83.2 518 27.4
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 6.1e-14 83.2 408 27.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.3e-13 82.0 320 28.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.8e-13 81.6 408 27.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.3e-13 81.3 322 31.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 2.3e-13 81.3 629 25.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-13 80.9 521 25.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.0e-13 80.9 454 28.4
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 3.9e-13 80.5 342 30.4
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 5.1e-13 80.1 456 28.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 5.1e-13 80.1 327 28.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 8.7e-13 79.3 335 29.3
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-12 78.6 574 25.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.9e-12 78.2 332 30.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.9e-12 78.2 408 28.2
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 3.3e-12 77.4 292 30.8
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.3e-12 77.4 537 25.5
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 4.3e-12 77.0 209 33.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.4e-12 76.3 563 27.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.3e-11 75.5 341 28.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 3.7e-11 73.9 153 40.5
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.7e-11 73.9 397 27.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.8e-11 73.6 201 33.8
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 8.2e-11 72.8 589 25.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-10 72.4 367 25.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.1e-10 72.4 461 29.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-10 72.0 321 30.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.8e-10 71.6 164 36.6
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 3.1e-10 70.9 225 31.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.1e-10 70.5 141 39.0
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.1e-10 70.5 172 34.9
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.2e-09 68.9 342 28.7
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.0e-09 68.2 408 26.2
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.0e-09 68.2 491 25.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.5e-09 67.0 555 24.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.5e-09 67.0 241 32.0
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.9e-09 66.6 333 28.2
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 7.7e-09 66.2 260 27.3
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-08 65.9 546 24.4
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.0e-08 65.9 476 26.1
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.3e-08 65.5 339 28.9
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.7e-08 65.1 479 25.9
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.9e-08 64.3 419 24.3
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 3.8e-08 63.9 462 25.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.0e-08 63.5 482 25.7
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 6.5e-08 63.2 597 23.8
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 8.5e-08 62.8 149 37.6
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 1.4e-07 62.0 419 25.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.5e-07 61.2 282 28.0
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 2.5e-07 61.2 85 45.9
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 2.5e-07 61.2 85 45.9
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 2.5e-07 61.2 84 51.2
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.2e-07 60.8 339 25.1
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.2e-07 60.5 256 30.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 7.2e-07 59.7 288 27.8
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.2e-07 59.7 299 25.4
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 9.4e-07 59.3 560 22.9
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.2e-06 58.9 199 31.2
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.6e-06 58.5 155 32.9
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.7e-06 57.8 45 62.2
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 3.6e-06 57.4 416 25.7
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.6e-06 57.4 418 28.2
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.6e-06 57.4 288 26.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 4.6e-06 57.0 45 62.2
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 4.6e-06 57.0 179 34.1
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 6.1e-06 56.6 289 28.0
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.1e-06 56.6 296 26.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 6.1e-06 56.6 85 42.4
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 7.9e-06 56.2 296 27.4


User provided reference genes

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