Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.3e-110 401.4 204 100.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.1e-61 239.6 198 59.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.5e-59 233.4 202 58.9
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.4e-59 232.3 204 59.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.9e-58 228.4 198 57.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 5.5e-57 224.9 197 57.4
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.0e-55 220.7 193 58.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.7e-55 217.6 205 55.1
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.9e-54 216.5 196 54.6
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.6e-54 214.9 198 54.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.3e-53 213.8 198 55.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.1e-53 213.0 198 54.5
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.1e-53 213.0 202 53.5
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.8e-53 212.6 198 54.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.7e-53 212.2 196 54.1
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.2e-53 211.5 198 52.5
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 6.2e-53 211.5 198 53.0
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.4e-52 210.3 194 54.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.8e-52 209.9 196 53.1
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 3.1e-52 209.1 197 55.8
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 3.1e-52 209.1 197 54.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 9.0e-52 207.6 199 54.3
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 9.0e-52 207.6 198 52.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.5e-51 206.8 198 53.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.6e-51 206.1 189 56.1
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.4e-51 205.7 199 50.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-50 203.8 197 51.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.7e-50 203.4 197 51.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.7e-50 203.4 204 52.5
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.2e-50 203.0 198 51.0
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.8e-50 202.2 199 51.8
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.8e-50 202.2 192 54.7
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.9e-50 201.8 198 51.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 6.5e-50 201.4 202 52.0
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 6.5e-50 201.4 199 52.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.4e-50 201.1 195 53.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 8.4e-50 201.1 196 53.1
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.1e-49 200.7 191 54.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.4e-49 200.3 198 51.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.9e-49 199.9 196 52.6
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.9e-49 199.9 201 51.2
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-49 199.1 196 51.5
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 4.2e-49 198.7 197 52.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 7.1e-49 198.0 189 52.4
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 9.3e-49 197.6 198 52.0
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 9.3e-49 197.6 196 52.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 9.3e-49 197.6 204 52.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 9.3e-49 197.6 204 52.5
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 192 55.2
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 205 51.2
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.6e-48 196.8 197 51.3
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 2.7e-48 196.1 196 51.5
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.7e-48 196.1 193 50.3
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 7.9e-48 194.5 198 50.0
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.0e-47 194.1 198 49.5
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.0e-47 194.1 202 51.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.8e-47 193.4 198 50.5
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.0e-47 192.6 205 50.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 8.7e-47 191.0 202 48.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-46 190.7 198 51.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.1e-46 190.7 198 53.0
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.5e-46 190.3 187 50.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.9e-46 189.9 199 50.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.9e-46 189.9 204 49.5
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.9e-46 189.9 197 49.7
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.5e-46 189.5 197 50.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.5e-46 189.5 192 50.0
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 198 48.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.3e-46 188.7 202 49.0
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 5.7e-46 188.3 245 42.4
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 7.4e-46 188.0 195 49.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 9.6e-46 187.6 198 49.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 9.6e-46 187.6 197 49.7
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.6e-45 186.8 197 48.2
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.6e-45 186.8 198 50.5
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.1e-45 186.4 198 49.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.8e-45 186.0 190 50.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.7e-45 185.7 202 48.5
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 3.7e-45 185.7 198 48.5
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.8e-45 185.3 199 48.7
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.8e-45 185.3 200 48.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.8e-45 185.3 190 50.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.8e-45 185.3 190 51.1
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 8.2e-45 184.5 152 63.2
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 8.2e-45 184.5 197 49.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 8.2e-45 184.5 194 49.5
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.8e-44 183.3 196 49.5
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-44 183.3 192 47.4
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.4e-44 183.0 192 48.4
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.0e-44 181.0 196 49.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.5e-43 180.3 198 49.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.6e-43 179.5 197 47.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.6e-43 179.5 197 47.7
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.0e-42 177.6 197 47.2
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-42 177.2 193 47.2
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.3e-42 177.2 192 47.4
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.2e-42 176.4 200 46.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.9e-42 176.0 181 51.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 2.9e-42 176.0 193 47.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.9e-42 176.0 193 47.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.9e-42 176.0 199 47.7
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 5.0e-42 175.3 194 48.5
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.0e-42 175.3 190 47.4
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 6.5e-42 174.9 193 47.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 6.5e-42 174.9 193 47.2
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-41 174.1 195 48.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.4e-41 173.7 191 47.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-41 172.9 193 46.1
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-41 172.6 193 48.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 4.2e-41 172.2 197 45.7
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 5.5e-41 171.8 182 50.5
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.2e-41 171.4 197 47.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.2e-40 170.6 198 46.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-40 170.2 196 45.4
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.6e-40 169.1 196 45.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.6e-40 169.1 196 45.9
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.9e-40 167.9 192 45.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.3e-39 167.2 199 44.2
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.3e-39 167.2 198 47.0
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.8e-39 166.8 197 45.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.9e-39 165.6 176 50.6
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 8.7e-39 164.5 149 56.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-38 164.1 193 45.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.3e-38 162.5 192 43.2
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.7e-38 161.8 200 45.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.7e-38 161.8 173 49.1
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.3e-37 160.6 192 42.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.3e-37 160.6 189 45.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.3e-37 160.6 196 43.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.7e-37 159.1 138 54.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.8e-37 158.7 200 44.5
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.8e-37 158.7 176 47.7
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 6.3e-37 158.3 193 44.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.4e-36 156.4 189 41.3
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.4e-36 156.4 192 42.7
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.1e-36 156.0 192 42.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.1e-36 156.0 193 43.0
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 9.0e-36 154.5 189 41.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.5e-35 153.7 191 41.9
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.5e-35 153.7 191 44.5
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.0e-35 153.3 147 51.7
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.9e-34 149.4 197 42.1
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.4e-33 147.1 198 40.9
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.2e-33 146.0 197 40.6
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.2e-33 144.8 197 40.6
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.2e-32 144.1 197 40.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 7.9e-32 141.4 193 43.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.3e-31 139.8 138 54.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.0e-31 139.4 192 39.6
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.0e-31 139.4 164 45.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.9e-31 139.0 158 47.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.9e-31 139.0 163 46.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.4e-30 134.8 128 51.6
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 6.3e-29 131.7 126 51.6
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.3e-29 131.7 199 39.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 8.2e-29 131.3 198 37.4
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.2e-29 131.3 165 45.5
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-26 124.4 199 37.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.2e-26 123.2 160 41.9
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.8e-26 122.5 192 38.5
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.5e-25 119.8 147 43.5
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.2e-25 119.0 113 51.3
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-24 116.7 158 43.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-19 100.5 95 51.6
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.9e-17 93.6 114 47.4
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 3.0e-15 86.3 206 29.1
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 9.7e-14 81.3 202 28.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.4e-12 76.6 187 30.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.1e-12 76.3 105 41.0
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-11 74.3 76 44.7
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-10 70.5 192 26.6
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 5.5e-09 65.5 85 44.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.2e-09 65.1 74 48.6
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.6e-08 63.9 76 39.5
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.4e-06 55.8 194 29.4


User provided reference genes

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