Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 0.0e+00 1894.4 961 100.0
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1187.6 955 64.2
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1131.3 957 61.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1104.7 958 61.6
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1103.2 953 60.8
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1099.3 953 60.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1099.0 955 61.4
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1094.0 956 61.0
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1090.1 953 60.2
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1087.4 958 59.6
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1080.5 966 59.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 7.9e-311 1070.5 960 59.4
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 3.8e-310 1068.1 957 59.4
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 3.8e-310 1068.1 974 59.1
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 5.0e-310 1067.8 955 59.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 8.5e-310 1067.0 953 58.8
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 3.2e-309 1065.1 956 60.4
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 7.2e-309 1063.9 966 59.8
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 7.9e-308 1060.4 953 59.1
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.8e-307 1059.3 953 59.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 8.8e-307 1057.0 954 58.8
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 7.4e-306 1053.9 956 58.2
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 3.7e-305 1051.6 958 57.0
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 5.3e-304 1047.7 962 57.8
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.1e-301 1040.0 955 58.2
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 9.4e-301 1036.9 955 57.6
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 1.6e-300 1036.2 956 56.9
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 2.1e-300 1035.8 953 57.5
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 8.0e-300 1033.9 955 58.3
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 2.3e-299 1032.3 953 57.5
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 3.0e-299 1031.9 959 56.4
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 5.2e-299 1031.2 955 57.5
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 5.2e-299 1031.2 955 58.2
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 5.2e-299 1031.2 951 58.7
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 5.2e-299 1031.2 955 58.1
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 5.2e-299 1031.2 957 57.3
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 6.7e-299 1030.8 958 58.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 1.1e-298 1030.0 958 58.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 2.0e-298 1029.2 957 58.1
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 4.4e-298 1028.1 957 58.2
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 9.7e-298 1026.9 962 57.2
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 4.8e-297 1024.6 954 57.4
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 3.1e-296 1021.9 955 57.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 2.0e-295 1019.2 956 56.0
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 4.5e-295 1018.1 954 56.2
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 6.5e-294 1014.2 952 56.1
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 5.5e-293 1011.1 952 55.4
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 1.2e-292 1010.0 956 56.6
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 8.0e-292 1007.3 954 55.9
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.8e-291 1006.1 992 55.4
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 2.3e-291 1005.7 954 55.7
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 4.0e-291 1005.0 930 57.2
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 2.0e-290 1002.7 951 55.1
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 9.7e-290 1000.3 955 55.9
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.4e-288 996.5 1169 48.9
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 2.0e-287 992.6 959 56.3
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 4.5e-287 991.5 876 58.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 4.5e-287 991.5 993 53.6
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 9.4e-285 983.8 953 55.4
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 1.0e-283 980.3 963 55.1
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 2.3e-283 979.2 965 55.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.5e-282 976.5 932 56.8
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.1e-280 968.8 955 55.7
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.8e-278 961.8 955 55.5
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 6.6e-278 961.1 956 53.9
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 1.0e-270 937.2 959 53.6
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 2.9e-270 935.6 951 53.6
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 6.1e-268 927.9 953 53.0
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.2e-267 924.9 1010 51.0
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.3e-265 920.2 1007 50.2
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 3.1e-259 899.0 960 51.7
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 3.2e-256 889.0 851 56.9
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.9e-246 855.5 802 56.1
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.6e-239 833.6 953 49.4
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 5.3e-235 818.5 931 48.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 5.4e-232 808.5 792 53.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.1e-231 806.6 990 47.2
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 6.2e-228 795.0 754 56.4
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 6.0e-223 778.5 811 54.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.4e-210 736.1 1005 42.1
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 4.8e-196 689.1 641 58.0
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 2.6e-189 666.8 761 50.9
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 7.0e-187 658.7 750 51.3
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.7e-175 620.2 517 63.1
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 4.1e-155 553.1 548 53.5
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 1.3e-148 531.6 530 53.6
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 6.4e-148 529.3 556 51.8
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 9.8e-141 505.4 960 36.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.0e-137 495.4 503 52.7
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 8.6e-137 492.3 409 61.9
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 1.5e-136 491.5 418 62.0
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.7e-122 444.1 434 58.5
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.5e-120 438.3 410 58.8
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 6.2e-119 433.0 480 51.2
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-112 412.1 395 55.7
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.9e-108 396.7 502 45.6
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 3.3e-104 384.0 312 63.5
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.4e-102 377.9 337 58.2
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 4.5e-101 373.6 539 43.6
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.3e-94 350.1 289 63.7
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.3e-76 292.4 311 53.1
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 2.2e-76 291.6 389 44.0
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.0e-73 282.7 181 77.9
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 7.4e-72 276.6 180 75.6
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 3.5e-69 267.7 213 63.4
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.5e-67 260.4 550 33.1
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.2e-56 226.1 178 62.4
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 9.8e-56 223.0 802 25.6
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 6.5e-52 210.3 264 47.0
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.1e-50 205.3 677 27.0
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.4e-48 198.0 382 35.3
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 3.1e-46 191.4 108 85.2
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 3.5e-45 188.0 112 83.9
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 4.5e-45 187.6 141 64.5
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 4.0e-41 174.5 138 62.3
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 6.8e-41 173.7 258 41.9
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.7e-39 169.1 186 51.1
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 2.7e-37 161.8 243 39.5
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 1.5e-35 156.0 211 40.8
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.5e-35 155.2 178 45.5
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.2e-32 146.4 256 35.2
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.8e-32 144.1 149 44.3
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.2e-29 136.3 149 52.3
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.6e-29 134.4 126 57.1
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 2.5e-27 128.6 139 49.6
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 4.9e-23 114.4 85 63.5
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 4.9e-23 114.4 85 64.7
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.6e-21 109.4 159 41.5
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.6e-21 109.4 78 65.4
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 4.6e-21 107.8 78 65.4
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.0e-20 106.7 55 92.7
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.0e-20 106.7 78 65.4
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.9e-19 102.4 79 60.8
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.3e-19 101.3 78 64.1
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-18 98.2 131 42.7
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 6.8e-17 94.0 188 32.4
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.7e-12 79.3 63 63.5
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 1.2e-10 73.2 70 51.4
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 8.1e-10 70.5 70 51.4
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 2.4e-09 68.9 63 57.1
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 3.1e-09 68.6 153 27.5
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 5.2e-09 67.8 64 51.6
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 4.4e-08 64.7 203 28.6
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 5.8e-08 64.3 49 61.2
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 5.8e-08 64.3 49 61.2
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 5.8e-08 64.3 49 61.2
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 7.6e-08 63.9 108 38.9
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.9e-07 62.0 52 61.5
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 6.4e-07 60.8 48 58.3
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.3e-06 57.0 142 26.8


User provided reference genes

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