Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 1.2e-253 879.4 452 100.0
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 1.9e-182 642.9 445 73.7
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 2.4e-182 642.5 459 73.0
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.2e-181 640.2 451 72.7
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.3e-180 636.0 445 73.0
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 5.6e-179 631.3 458 70.5
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 5.6e-179 631.3 455 71.9
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 2.1e-178 629.4 446 71.5
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 2.8e-178 629.0 443 71.8
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 6.2e-178 627.9 415 75.2
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 8.1e-178 627.5 444 71.8
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 1.8e-177 626.3 450 70.9
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.8e-177 626.3 448 71.2
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 2.4e-177 625.9 458 70.3
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 4.0e-177 625.2 441 72.1
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.5e-176 623.2 459 70.2
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 3.4e-176 622.1 459 69.9
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 3.4e-176 622.1 463 68.9
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 5.8e-176 621.3 456 70.8
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 5.8e-176 621.3 456 70.4
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 5.8e-176 621.3 455 71.4
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 5.8e-176 621.3 441 71.4
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 7.6e-176 620.9 457 70.2
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.7e-175 619.8 459 69.1
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 2.2e-175 619.4 456 69.5
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 4.9e-175 618.2 445 70.8
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 4.9e-175 618.2 456 69.5
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 4.9e-175 618.2 456 70.0
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 8.4e-175 617.5 443 70.9
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 8.4e-175 617.5 416 74.0
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.1e-174 617.1 448 68.8
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 1.4e-174 616.7 447 68.9
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 1.9e-174 616.3 457 69.8
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 2.4e-174 615.9 458 69.2
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.2e-174 615.5 459 69.3
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 4.1e-174 615.1 483 67.1
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 5.4e-174 614.8 457 70.5
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 7.1e-174 614.4 439 69.7
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 7.1e-174 614.4 444 70.9
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 1.2e-173 613.6 420 72.4
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.6e-173 613.2 457 70.2
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 3.5e-173 612.1 441 70.3
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 4.6e-173 611.7 447 68.7
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.0e-173 611.3 450 68.9
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.0e-172 610.5 450 70.0
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.0e-172 610.5 423 72.1
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.3e-172 610.1 446 68.6
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.7e-172 609.8 456 68.4
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 3.0e-172 609.0 421 72.4
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 3.0e-172 609.0 461 68.5
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.9e-172 608.6 451 69.6
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 8.7e-172 607.4 420 72.1
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 8.7e-172 607.4 455 68.4
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.1e-171 607.1 454 66.7
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 1.9e-171 606.3 458 68.1
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 2.5e-171 605.9 467 66.2
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 3.3e-171 605.5 439 69.5
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 4.3e-171 605.1 446 68.6
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 7.3e-171 604.4 457 68.7
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.1e-170 602.8 439 69.0
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.1e-170 602.8 454 68.5
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 3.6e-170 602.1 457 67.8
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.7e-170 601.7 461 66.6
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 6.2e-170 601.3 459 66.4
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 8.1e-170 600.9 451 67.4
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 1.4e-169 600.1 449 67.9
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 1.4e-169 600.1 449 67.9
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 1.4e-169 600.1 449 67.9
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 1.8e-169 599.7 455 65.9
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 5.2e-169 598.2 502 63.3
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 9.0e-169 597.4 447 67.6
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 1.2e-168 597.0 451 67.4
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.5e-168 596.7 455 68.8
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 2.6e-168 595.9 454 67.6
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 4.4e-168 595.1 445 66.7
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 7.6e-168 594.3 450 67.6
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 7.6e-168 594.3 460 67.0
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.7e-167 593.2 450 67.3
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 2.9e-167 592.4 460 66.1
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.9e-167 592.4 453 68.4
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.9e-167 592.4 461 66.6
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 3.8e-167 592.0 460 66.7
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 3.8e-167 592.0 459 66.0
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.9e-167 591.7 419 70.9
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 8.4e-167 590.9 452 66.6
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.9e-166 589.7 466 65.9
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 2.4e-166 589.3 453 67.1
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.2e-166 588.6 448 68.1
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 4.2e-166 588.6 465 65.4
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.4e-166 588.2 461 66.4
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 1.6e-165 586.6 461 65.9
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 2.1e-165 586.3 458 65.3
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 2.1e-165 586.3 465 65.8
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.0e-164 583.9 450 66.2
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 3.9e-164 582.0 466 65.0
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 5.1e-164 581.6 488 62.3
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 6.6e-164 581.3 421 68.9
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.3e-163 578.6 447 67.1
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 9.6e-163 577.4 446 65.7
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 2.1e-162 576.2 453 64.7
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 8.1e-162 574.3 474 62.9
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 2.4e-161 572.8 400 69.5
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 5.3e-161 571.6 416 68.0
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 7.6e-160 567.8 459 63.6
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 1.2e-157 560.5 461 62.3
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 1.8e-156 556.6 459 62.5
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 4.8e-154 548.5 399 68.4
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.7e-151 540.0 415 67.7
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 1.4e-150 537.0 456 61.0
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 3.2e-150 535.8 398 68.3
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.5e-139 500.4 399 61.7
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.3e-135 487.3 410 60.0
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 2.9e-135 486.1 398 61.1
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 6.3e-130 468.4 318 73.6
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.2e-127 459.9 367 64.9
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.0e-111 407.9 452 49.6
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 8.3e-98 361.7 405 50.1
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.8e-97 360.5 279 64.5
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 3.1e-97 359.8 551 38.7
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 4.0e-84 316.2 254 65.7
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.2e-69 268.1 188 71.3
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 1.9e-65 254.2 251 53.8
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 9.9e-59 231.9 235 52.3
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.3e-58 231.5 235 52.3
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.3e-50 204.9 207 57.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.9e-38 164.5 145 57.9
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 1.1e-36 158.7 146 57.5
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 4.0e-36 156.8 151 58.3
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 6.4e-34 149.4 105 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.0e-31 142.1 385 29.9
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 4.3e-30 136.7 123 57.7
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 7.7e-19 99.4 60 73.3
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.7e-16 90.9 57 77.2
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 2.5e-14 84.3 59 64.4
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 2.6e-11 74.3 71 53.5


User provided reference genes

Program Settings