Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.0e-81 304.7 151 100.0
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.2e-46 188.7 152 63.2
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.7e-43 177.9 146 57.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 8.2e-42 174.1 146 56.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.4e-41 173.3 146 55.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.8e-41 172.9 146 55.5
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.3e-41 171.4 146 55.5
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.9e-41 171.0 145 56.6
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.5e-40 169.9 141 58.2
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-40 169.5 145 53.1
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.0e-40 169.5 147 53.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.6e-40 169.1 145 53.8
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.0e-39 167.2 145 53.1
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.0e-39 167.2 150 54.0
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.3e-39 166.8 147 52.4
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.3e-39 166.8 146 53.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-39 166.8 146 53.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.3e-39 166.8 146 52.7
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-39 166.4 145 52.4
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.7e-39 166.4 144 50.7
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.9e-39 165.6 145 52.4
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.5e-39 164.5 145 53.8
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 8.5e-39 164.1 137 54.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-38 163.7 145 54.5
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-38 163.7 145 54.5
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.1e-38 163.7 150 50.7
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.1e-38 163.7 146 52.1
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.9e-38 162.9 145 51.0
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.5e-38 162.5 145 50.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 3.2e-38 162.2 145 53.1
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.5e-38 161.4 146 51.4
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.2e-38 161.0 145 51.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 7.2e-38 161.0 150 54.7
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 9.3e-38 160.6 141 52.5
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.2e-37 160.2 147 51.7
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-37 160.2 146 50.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.6e-37 159.8 141 53.2
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.1e-37 159.5 145 50.3
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.1e-37 159.5 145 50.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.7e-37 159.1 141 52.5
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.7e-37 159.1 145 52.4
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.6e-37 158.7 146 50.0
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 7.9e-37 157.5 150 46.7
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 7.9e-37 157.5 144 50.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.0e-36 157.1 150 50.0
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.0e-36 157.1 147 49.7
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-36 156.8 141 49.6
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-36 156.8 146 50.7
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.3e-36 156.8 150 50.7
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.3e-36 156.0 140 52.1
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.0e-36 155.6 145 51.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 3.0e-36 155.6 143 51.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.9e-36 155.2 132 54.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 5.1e-36 154.8 143 50.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-35 153.7 145 50.3
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-35 153.7 145 47.6
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.5e-35 153.3 141 50.4
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.5e-35 152.5 143 51.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.3e-35 152.1 146 48.6
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.3e-35 151.8 145 49.0
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 7.4e-35 151.0 144 49.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 7.4e-35 151.0 151 51.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.4e-35 151.0 145 49.0
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 7.4e-35 151.0 146 48.6
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 9.7e-35 150.6 145 48.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.2e-34 149.4 145 49.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 2.8e-34 149.1 144 48.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.8e-34 149.1 146 48.6
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.7e-34 148.7 146 50.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.8e-34 148.3 124 58.1
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 8.2e-34 147.5 145 49.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.1e-33 147.1 145 48.3
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.1e-33 147.1 150 48.7
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-33 146.7 141 48.2
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.8e-33 146.4 146 47.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 4.1e-33 145.2 144 46.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.1e-33 145.2 145 48.3
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.3e-33 144.8 144 49.3
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.9e-33 144.4 141 46.8
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 6.9e-33 144.4 141 46.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.2e-32 143.7 143 48.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-32 143.7 146 47.3
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.5e-32 143.3 144 47.2
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.5e-32 143.3 144 47.2
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-32 143.3 143 46.2
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-32 142.9 141 48.2
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.6e-32 142.5 144 47.2
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-32 142.5 145 46.2
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.4e-32 142.1 149 48.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.5e-32 141.7 144 45.8
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 4.5e-32 141.7 144 47.2
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.9e-32 141.4 135 53.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.7e-32 141.0 145 43.4
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.7e-32 141.0 145 43.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-31 140.6 136 53.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.3e-31 140.2 146 45.2
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.3e-31 140.2 150 48.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.3e-31 140.2 144 45.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-31 140.2 145 45.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.7e-31 139.8 146 45.9
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-31 139.8 141 48.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.7e-31 139.8 140 50.0
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.2e-31 139.4 141 46.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.2e-31 139.4 145 44.8
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.9e-31 139.0 146 47.9
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 5.0e-31 138.3 146 43.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 5.0e-31 138.3 144 45.8
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.5e-31 137.9 144 45.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 8.5e-31 137.5 146 43.8
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-30 137.1 137 48.2
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-30 137.1 146 41.8
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-30 136.7 141 46.8
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-30 136.7 149 44.3
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.4e-30 136.7 149 44.3
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.4e-30 136.7 141 46.8
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.5e-30 136.0 145 44.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.2e-30 135.6 147 45.6
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.4e-30 134.0 146 41.1
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.6e-29 133.3 153 44.4
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 3.6e-29 132.1 146 41.8
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 3.6e-29 132.1 144 44.4
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.0e-28 130.6 148 45.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-28 130.2 141 44.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-28 130.2 141 44.7
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.4e-28 130.2 143 46.9
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-28 129.4 141 44.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 5.1e-28 128.3 141 43.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.1e-28 128.3 141 44.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 8.8e-28 127.5 140 44.3
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 8.8e-28 127.5 145 45.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.5e-27 126.7 139 45.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-27 126.7 141 41.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.6e-27 125.9 140 42.9
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.6e-27 125.9 122 47.5
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-27 125.9 144 41.7
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-27 125.6 145 42.1
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.4e-27 125.2 141 41.8
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.4e-27 125.2 141 44.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 5.7e-27 124.8 145 42.8
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.4e-27 124.4 145 42.8
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.4e-27 124.4 145 42.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 9.7e-27 124.0 141 41.8
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 9.7e-27 124.0 145 43.4
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.7e-26 123.2 158 38.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.2e-26 122.9 141 41.8
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-25 120.6 142 41.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-25 120.2 141 43.3
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.8e-25 119.8 152 40.8
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 4.1e-25 118.6 152 40.8
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 5.3e-25 118.2 124 47.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.3e-25 118.2 151 39.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 8.5e-23 110.9 109 52.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.1e-22 110.5 149 38.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 9.4e-22 107.5 92 51.1
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-21 107.1 147 38.1
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-21 105.9 118 41.5
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.7e-21 105.1 111 44.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.1e-21 104.8 150 38.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.7e-19 97.4 102 41.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.4e-17 92.8 146 34.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 2.0e-16 89.7 82 50.0
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.5e-16 88.6 82 50.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.3e-15 87.0 108 45.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.7e-15 86.7 94 46.8
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.5e-14 82.8 99 43.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.8e-10 69.3 87 41.4
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-09 67.0 70 44.3
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.0e-09 64.7 65 44.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.0e-08 63.2 63 46.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.7e-07 60.1 158 30.4


User provided reference genes

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