Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G577 Amborella trichopoda HOM05D000173 ORTHO05D005118 2.0e-52 208.8 99 100.0
ATR0824G063 Amborella trichopoda HOM05D000173 ORTHO05D005118 5.7e-36 154.1 82 90.2
SEGI_24920 Sequoiadendron giganteum HOM05D000173 ORTHO05D005118 4.1e-34 147.9 82 84.1
TAR622G1319 Trochodendron aralioides HOM05D000173 ORTHO05D005118 1.2e-33 146.4 82 82.9
Duzib248G1142 Durio zibethinus HOM05D000173 ORTHO05D005118 2.7e-33 145.2 82 81.7
Nn4g22515 Nelumbo nucifera HOM05D000173 ORTHO05D005118 2.7e-33 145.2 82 81.7
Os02g0596900 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D005118 2.7e-33 145.2 82 82.9
Thecc.02G267300 Theobroma cacao HOM05D000173 ORTHO05D005118 2.7e-33 145.2 82 81.7
Atru.chr11.2189 Acer truncatum HOM05D000173 ORTHO05D005118 3.5e-33 144.8 82 81.7
TAR374G1269 Trochodendron aralioides HOM05D000173 ORTHO05D005118 3.5e-33 144.8 82 81.7
Cpa.g.sc33.85 Carica papaya HOM05D000173 ORTHO05D005118 4.5e-33 144.4 82 81.7
Lj3A1063T57 Lonicera japonica HOM05D000173 ORTHO05D005118 4.5e-33 144.4 82 80.5
Sopen05g008870 Solanum pennellii HOM05D000173 ORTHO05D005118 4.5e-33 144.4 82 81.7
PGSC0003DMG400010772 Solanum tuberosum HOM05D000173 ORTHO05D005118 4.5e-33 144.4 82 81.7
Eucgr.H02449 Eucalyptus grandis HOM05D000173 ORTHO05D005118 5.9e-33 144.1 82 80.5
Peaxi162Scf00128g00629 Petunia axillaris HOM05D000173 ORTHO05D005118 5.9e-33 144.1 82 81.7
MSTRG.7957 Avicennia marina HOM05D000173 ORTHO05D005118 7.8e-33 143.7 82 79.3
Hma1.2p1_0079F.1_g041280 Hydrangea macrophylla HOM05D000173 ORTHO05D005118 7.8e-33 143.7 82 80.5
CSS0010881 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005118 1.0e-32 143.3 82 79.3
CSS0024162 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005118 1.0e-32 143.3 82 79.3
Cfa009262 Carpinus fangiana HOM05D000173 ORTHO05D005118 1.0e-32 143.3 82 80.5
CiPaw.05G176600 Carya illinoinensis HOM05D000173 ORTHO05D005118 1.0e-32 143.3 82 80.5
Haze_12295 Corylus avellana HOM05D000173 ORTHO05D005118 1.0e-32 143.3 82 80.5
QL03p056088 Quercus lobata HOM05D000173 ORTHO05D005118 1.0e-32 143.3 82 80.5
CSS0032240 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 79.3
CANSAT01G1411 Cannabis sativa HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 79.3
COL.COLO4_23534 Corchorus olitorius HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 80.5
Dinv11030 Davidia involucrata HOM05D002413 ORTHO05D005118 1.7e-32 142.5 82 79.3
Dinv14757 Davidia involucrata HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 79.3
Duzib268G0638 Durio zibethinus HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 80.5
PSO063G0928 Papaver somniferum HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 79.3
Solyc05g013940.4 Solanum lycopersicum HOM05D000173 ORTHO05D005118 1.7e-32 142.5 82 80.5
Ah.02g130380 Amaranthus hybridus HOM05D002979 ORTHO05D005118 2.3e-32 142.1 82 79.3
CDE09G0462 Ceratophyllum demersum HOM05D000173 ORTHO05D005118 2.3e-32 142.1 82 80.5
Migut.K00636 Erythranthe guttata HOM05D000173 ORTHO05D005118 2.3e-32 142.1 82 78.0
MD13G1105900 Malus domestica HOM05D000173 ORTHO05D005118 2.3e-32 142.1 82 79.3
Nitab4.5_0005933g0020 Nicotiana tabacum HOM05D000173 ORTHO05D005118 2.3e-32 142.1 82 79.3
PSO067G0005 Papaver somniferum HOM05D000173 ORTHO05D005118 2.3e-32 142.1 82 79.3
vmacro16158 Vaccinium macrocarpon HOM05D000173 ORTHO05D005118 2.3e-32 142.1 82 80.5
Gohir.A03G131900 Gossypium hirsutum HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
Gohir.D02G155901 Gossypium hirsutum HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
Gorai.005G174800 Gossypium raimondii HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
Lalb_Chr07g0185541 Lupinus albus HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 80.5
Prupe.1G240300 Prunus persica HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
Hund25412 Selenicereus undatus HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
Sc04g0009740 Simmondsia chinensis HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
GSVIVG01000587001 Vitis vinifera HOM05D000173 ORTHO05D005118 2.9e-32 141.7 82 79.3
Aqoxy5G03633 Aquilegia oxysepala HOM05D000173 ORTHO05D005118 5.0e-32 141.0 82 78.0
MELO3C011913.2 Cucumis melo HOM05D000173 ORTHO05D005118 5.0e-32 141.0 82 78.0
CsaV3_5G030720 Cucumis sativus L. HOM05D000173 ORTHO05D005118 5.0e-32 141.0 82 78.0
Duzib251G0677 Durio zibethinus HOM05D000173 ORTHO05D005118 5.0e-32 141.0 82 79.3
Sed0014230 Sechium edule HOM05D000173 ORTHO05D005118 5.0e-32 141.0 82 78.0
HPP92_006207 Vanilla planifolia HOM05D000173 ORTHO05D005118 5.0e-32 141.0 82 80.5
Gohir.A12G146100 Gossypium hirsutum HOM05D000173 ORTHO05D005118 6.6e-32 140.6 82 79.3
Gorai.008G162200 Gossypium raimondii HOM05D000173 ORTHO05D005118 6.6e-32 140.6 82 79.3
Lalb_Chr13g0295801 Lupinus albus HOM05D000173 ORTHO05D005118 8.6e-32 140.2 82 79.3
MD16G1106100 Malus domestica HOM05D000173 ORTHO05D005118 8.6e-32 140.2 82 78.0
TWI75G1344 Tripterygium wilfordii HOM05D000173 ORTHO05D005118 8.6e-32 140.2 82 78.0
arahy.Tifrunner.gnm1.ann1.L0HS84 Arachis hypogaea HOM05D000173 ORTHO05D005118 1.1e-31 139.8 82 79.3
arahy.Tifrunner.gnm1.ann1.NV77KT Arachis hypogaea HOM05D000173 ORTHO05D005118 1.1e-31 139.8 82 79.3
AUR62005525 Chenopodium quinoa HOM05D000173 ORTHO05D005118 1.1e-31 139.8 82 80.5
ClCG05G026140 Citrullus lanatus HOM05D000173 ORTHO05D005118 1.1e-31 139.8 82 76.8
Lalb_Chr12g0204111 Lupinus albus HOM05D000173 ORTHO05D005118 1.5e-31 139.4 82 78.0
Sabra10G0018600 Salix brachista HOM05D000173 ORTHO05D005118 1.9e-31 139.0 82 79.3
Nitab4.5_0000067g0260 Nicotiana tabacum HOM05D000173 ORTHO05D005118 2.5e-31 138.7 82 78.0
RcHm_v2.0_Chr4g0432381 Rosa chinensis HOM05D000173 ORTHO05D005118 2.5e-31 138.7 82 76.8
TWI36G0641 Tripterygium wilfordii HOM05D000173 ORTHO05D005118 2.5e-31 138.7 82 78.0
FvH4_4g25180 Fragaria vesca HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 76.8
FAN07G0203 Fragaria x ananassa HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 76.8
FAN12G3393 Fragaria x ananassa HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 76.8
FAN17G0066 Fragaria x ananassa HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 76.8
FAN22G2126 Fragaria x ananassa HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 76.8
Gohir.D12G150700 Gossypium hirsutum HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 78.0
Nitab4.5_0007967g0010 Nicotiana tabacum HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 78.0
Potri.010G051500 Populus trichocarpa HOM05D000173 ORTHO05D005118 3.3e-31 138.3 82 79.3
Cc11_g16170 Coffea canephora HOM05D000173 ORTHO05D005118 4.3e-31 137.9 82 75.6
Nitab4.5_0000041g0090 Nicotiana tabacum HOM05D000173 ORTHO05D005118 4.3e-31 137.9 80 78.8
CAN.G43.32 Capsicum annuum HOM05D000173 ORTHO05D005118 5.6e-31 137.5 82 79.3
Medtr8g089630 Medicago truncatula HOM05D000173 ORTHO05D005118 5.6e-31 137.5 82 76.8
Psat7g059080 Pisum sativum HOM05D000173 ORTHO05D005118 5.6e-31 137.5 82 76.8
TPR.G6282 Trifolium pratense HOM05D000173 ORTHO05D005118 5.6e-31 137.5 82 76.8
CAN.G37.8 Capsicum annuum HOM05D000173 ORTHO05D005118 7.3e-31 137.1 82 75.6
SalBow2G3587 Salvia bowleyana HOM05D000173 ORTHO05D005118 7.3e-31 137.1 82 78.0
Sed0008942 Sechium edule HOM05D000173 ORTHO05D005118 7.3e-31 137.1 82 75.6
Zm00001eb246220 Zea mays HOM05D000173 ORTHO05D005118 7.3e-31 137.1 83 79.5
unitig_8.g3933 Utricularia gibba HOM05D000173 ORTHO05D005118 9.5e-31 136.7 82 75.6
Migut.E00222 Erythranthe guttata HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 75.6
Phvul.002G253600 Phaseolus vulgaris HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 75.6
Potri.008G182700 Populus trichocarpa HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 78.0
Sabra08G0139200 Salix brachista HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 78.0
SalBow8G2147 Salvia bowleyana HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 78.0
Solyc04g024530.3 Solanum lycopersicum HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 76.8
Sopen04g010430 Solanum pennellii HOM05D000173 ORTHO05D005118 1.2e-30 136.3 82 76.8
AUR62024212 Chenopodium quinoa HOM05D000173 ORTHO05D005118 1.6e-30 136.0 80 81.2
Gohir.D01G152900 Gossypium hirsutum HOM05D000173 ORTHO05D005118 1.6e-30 136.0 82 76.8
Gorai.002G189400 Gossypium raimondii HOM05D000173 ORTHO05D005118 1.6e-30 136.0 82 76.8
Zm00001eb183860 Zea mays HOM05D000173 ORTHO05D005118 1.6e-30 136.0 83 78.3
Phvul.002G252900 Phaseolus vulgaris HOM05D000173 ORTHO05D005118 2.8e-30 135.2 82 74.4
AT1G13180 Arabidopsis thaliana HOM05D000173 ORTHO05D005118 4.7e-30 134.4 82 75.6
BcaB03g13153 Brassica carinata HOM05D000173 ORTHO05D005118 4.7e-30 134.4 82 75.6
Carub.0001s1291 Capsella rubella HOM05D000173 ORTHO05D005118 4.7e-30 134.4 82 75.6
Thhalv10007702m.g Eutrema salsugineum HOM05D000173 ORTHO05D005118 4.7e-30 134.4 82 75.6
Sp1g11700 Schrenkiella parvula HOM05D000173 ORTHO05D005118 4.7e-30 134.4 82 75.6
Actinidia15122 Actinidia chinensis HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 75.6
BcaNung02569 Brassica carinata HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 75.6
C08p15910 Brassica napus HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 75.6
BolC8t49215H Brassica oleracea HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 75.6
Manes.12G019300 Manihot esculenta HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 76.8
Oeu013545.1 Olea europaea HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 76.8
VMungo0251G3170 Vigna mungo HOM05D000173 ORTHO05D005118 6.1e-30 134.0 82 74.4
Glyma.05G172600 Glycine max HOM05D000173 ORTHO05D005118 8.0e-30 133.7 82 73.2
A06p08560 Brassica napus HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
A08p32420 Brassica napus HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
C05p10180 Brassica napus HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
BolC5t29762H Brassica oleracea HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
BraA06t24052Z Brassica rapa HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
BraA08t35166Z Brassica rapa HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
CARHR013550 Cardamine hirsuta HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 74.4
Oeu038654.3 Olea europaea HOM05D000173 ORTHO05D005118 1.0e-29 133.3 82 73.2
AL1G24860 Arabidopsis lyrata HOM05D000173 ORTHO05D005118 1.4e-29 132.9 82 74.4
Aa31LG1G1620 Aethionema arabicum HOM05D000173 ORTHO05D005118 1.8e-29 132.5 82 75.6
Lj4g0001543 Lotus japonicus HOM05D000173 ORTHO05D005118 1.8e-29 132.5 82 72.0
THA.LOC104805264 Tarenaya hassleriana HOM05D000173 ORTHO05D005118 1.8e-29 132.5 82 72.0
BcaC05g25078 Brassica carinata HOM05D000173 ORTHO05D005118 2.3e-29 132.1 82 73.2
Oeu059780.1 Olea europaea HOM05D000173 ORTHO05D005118 3.0e-29 131.7 82 72.0
Lsat_1_v5_gn_4_2801 Lactuca sativa HOM05D000173 ORTHO05D005118 4.0e-29 131.3 82 74.4
Actinidia37457 Actinidia chinensis HOM05D000173 ORTHO05D005118 5.2e-29 131.0 82 74.4
Pp3c21_17450 Physcomitrium patens HOM05D000173 ORTHO05D005118 5.2e-29 131.0 82 74.4
DCAR_031171 Daucus carota HOM05D000173 ORTHO05D005118 6.8e-29 130.6 82 75.6
THA.LOC104825679 Tarenaya hassleriana HOM05D000173 ORTHO05D005118 6.8e-29 130.6 82 72.0
Manes.13G019900 Manihot esculenta HOM05D000173 ORTHO05D005118 1.2e-28 129.8 82 74.4
Lsat_1_v5_gn_8_155161 Lactuca sativa HOM05D000173 ORTHO05D005118 1.5e-28 129.4 82 72.0
HanXRQChr17g0569641 Helianthus annuus HOM05D000173 ORTHO05D005118 2.6e-28 128.6 82 73.2
ECA234G0363 Erigeron canadensis HOM05D000173 ORTHO05D005118 7.5e-28 127.1 82 70.7
Mapoly0121s0042 Marchantia polymorpha HOM05D000173 ORTHO05D005118 9.8e-28 126.7 82 72.0
DCAR_007034 Daucus carota HOM05D000173 ORTHO05D005118 1.7e-27 125.9 82 73.2
Lj6C816T4 Lonicera japonica HOM05D000173 ORTHO05D005118 2.9e-27 125.2 82 70.7
SMO197G0069 Selaginella moellendorffii HOM05D000173 ORTHO05D005118 3.7e-27 124.8 82 72.0
AagrBONN_evm.TU.Sc2ySwM_344.529 Anthoceros agrestis HOM05D000173 ORTHO05D005118 3.9e-24 114.8 82 69.5
Zm00001eb173290 Zea mays HOM05D000173 ORTHO05D005118 5.0e-24 114.4 82 67.1
Zm00001eb261670 Zea mays HOM05D000173 ORTHO05D005118 5.0e-24 114.4 82 67.1
SHI17848 Sapria himalayana HOM05D000173 ORTHO05D005118 2.5e-23 112.1 82 67.1
SGA_v2.0_scaffold87G27106 Striga asiatica HOM05D000173 ORTHO05D005118 2.5e-23 112.1 90 63.3
CBR_g45374 Chara braunii HOM05D000173 ORTHO05D005118 4.3e-23 111.3 84 64.3
Gohir.A01G157600 Gossypium hirsutum HOM05D000173 ORTHO05D005118 4.7e-22 107.8 85 63.5
Haze_26401 Corylus avellana HOM05D000173 ORTHO05D005118 1.5e-20 102.8 82 57.3
Cfa025532 Carpinus fangiana HOM05D000173 ORTHO05D005118 7.5e-20 100.5 82 58.5
EL10As2g23190 Beta vulgaris HOM05D000173 ORTHO05D005118 1.3e-19 99.8 72 68.1
VMungo0251G2751 Vigna mungo HOM05D000173 ORTHO05D005118 2.2e-19 99.0 61 73.8
CDE02G2581 Ceratophyllum demersum HOM05D000173 ORTHO05D005118 7.0e-18 94.0 80 58.8
Pp3c22_11480 Physcomitrium patens HOM05D000173 ORTHO05D005118 3.3e-15 85.1 56 71.4
Cre16.g676050 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D005118 3.6e-14 81.6 82 53.7
Lsat_1_v5_gn_1_1361 Lactuca sativa HOM05D000612 ORTHO05D000461 1.5e-07 59.7 60 51.7
CBR_g40116 Chara braunii HOM05D000173 ORTHO05D006747 1.9e-07 59.3 80 36.2
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 3.3e-07 58.5 41 65.9
Cre16.g687500 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D006747 9.5e-07 57.0 101 31.7
SGA_v2.0_scaffold25G11178 Striga asiatica HOM05D000173 ORTHO05D000316 4.7e-06 54.7 78 33.3
DCAR_010244 Daucus carota HOM05D000173 ORTHO05D000316 6.2e-06 54.3 78 37.2


User provided reference genes

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