Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 6.9e-229 797.0 407 100.0
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 2.9e-126 456.1 376 61.4
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 3.5e-124 449.1 369 62.1
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 1.0e-123 447.6 376 61.4
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 3.0e-123 446.0 385 60.0
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.9e-123 445.7 365 63.0
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 5.1e-123 445.3 374 62.3
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 1.5e-122 443.7 367 61.9
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 2.5e-122 443.0 373 61.7
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 7.4e-122 441.4 372 61.6
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.6e-121 440.3 367 62.4
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 2.8e-121 439.5 415 58.1
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 6.3e-121 438.3 413 56.4
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 8.2e-121 438.0 371 63.1
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 5.3e-120 435.3 370 59.7
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 9.0e-120 434.5 369 59.6
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.2e-119 434.1 365 61.6
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 1.2e-119 434.1 341 66.0
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 2.0e-119 433.3 371 62.5
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.6e-119 433.0 371 59.3
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 4.5e-119 432.2 367 62.9
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 5.9e-119 431.8 387 58.1
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 1.3e-118 430.6 384 59.4
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.2e-118 429.9 363 62.8
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 2.9e-118 429.5 430 54.2
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 2.9e-118 429.5 386 57.5
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 3.8e-118 429.1 371 60.9
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.1e-117 427.6 363 62.3
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 2.5e-117 426.4 413 55.7
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 5.5e-117 425.2 414 54.8
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 7.2e-117 424.9 359 60.7
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.2e-116 424.1 363 62.3
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 1.2e-116 424.1 388 59.5
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.6e-116 423.7 391 57.5
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 1.6e-116 423.7 365 60.5
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 2.7e-116 422.9 365 60.8
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 3.6e-116 422.5 341 63.3
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 3.6e-116 422.5 365 59.5
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 4.6e-116 422.2 359 60.7
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 6.1e-116 421.8 394 58.1
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 7.9e-116 421.4 344 63.7
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.0e-115 421.0 338 63.9
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 1.4e-115 420.6 338 63.9
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.3e-115 419.9 362 60.2
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 5.1e-115 418.7 340 62.6
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 6.7e-115 418.3 365 60.0
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 8.8e-115 417.9 369 59.3
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.1e-114 417.5 391 57.3
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 1.5e-114 417.2 341 63.0
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.5e-114 417.2 376 57.7
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 2.0e-114 416.8 365 59.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 2.0e-114 416.8 440 51.8
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 3.3e-114 416.0 422 55.5
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.3e-114 416.0 395 55.4
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 5.7e-114 415.2 370 58.9
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 7.4e-114 414.8 369 60.4
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 9.7e-114 414.5 395 58.0
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 3.7e-113 412.5 366 60.4
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 6.3e-113 411.8 360 59.7
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 8.2e-113 411.4 379 57.5
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 8.2e-113 411.4 364 60.4
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.8e-112 410.2 364 59.1
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 2.4e-112 409.8 338 62.4
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 2.4e-112 409.8 330 63.0
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 5.3e-112 408.7 371 58.8
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 5.3e-112 408.7 364 59.3
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 6.9e-112 408.3 371 58.5
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 9.1e-112 407.9 365 58.9
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 1.2e-111 407.5 385 57.7
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 1.2e-111 407.5 344 61.0
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 1.5e-111 407.1 430 53.7
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 5.9e-111 405.2 334 64.1
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 1.0e-110 404.4 343 60.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.0e-110 404.4 428 53.7
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.0e-110 404.4 364 58.8
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.2e-110 403.3 339 61.4
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 2.9e-110 402.9 371 57.7
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 2.9e-110 402.9 371 57.7
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 2.9e-110 402.9 393 54.2
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.1e-109 401.0 347 60.2
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 5.5e-109 398.7 345 59.7
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 9.4e-109 397.9 383 56.4
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 9.4e-109 397.9 373 55.2
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.4e-107 394.0 344 59.6
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 1.4e-107 394.0 335 59.4
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.0e-107 392.9 332 59.6
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 1.2e-103 380.9 388 53.6
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 7.7e-103 378.3 339 60.2
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.0e-102 377.9 306 64.4
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 8.5e-102 374.8 365 54.2
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 3.6e-100 369.4 362 55.0
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 2.6e-98 363.2 292 62.7
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 8.5e-94 348.2 400 48.8
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 5.9e-87 325.5 384 48.7
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 1.1e-85 321.2 363 50.7
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 3.4e-82 309.7 372 47.0
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 9.8e-82 308.1 239 66.1
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 2.4e-80 303.5 233 67.8
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 4.1e-80 302.8 243 64.6
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 2.8e-68 263.5 338 44.4
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 2.3e-67 260.4 348 43.7
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.1e-67 260.0 211 66.4
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 3.2e-64 250.0 342 40.6
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 5.4e-64 249.2 209 61.7
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 1.0e-62 245.0 202 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.5e-58 231.1 219 53.4
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 1.5e-58 231.1 340 42.1
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 2.0e-42 177.6 190 54.2
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 2.8e-36 157.1 199 47.2
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.7e-31 140.6 246 38.6
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 7.6e-26 122.5 92 68.5
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.5e-23 113.6 93 63.4
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 1.9e-21 107.8 111 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 6.9e-19 99.4 100 53.0
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 7.6e-18 95.9 345 29.6
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 1.1e-16 92.0 350 27.1
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.4e-16 91.7 155 41.9
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 1.3e-14 85.1 113 45.1
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 6.9e-11 72.8 123 36.6
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 3.9e-06 57.0 38 65.8


User provided reference genes

Program Settings