Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G287 Amborella trichopoda HOM05D002030 ORTHO05D026400 1.1e-66 256.5 128 100.0
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.6e-62 242.7 124 96.0
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 1.4e-58 229.6 123 90.2
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 4.0e-58 228.0 124 88.7
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 5.3e-58 227.6 123 89.4
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 5.3e-58 227.6 123 89.4
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 5.3e-58 227.6 123 89.4
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 5.3e-58 227.6 123 89.4
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 5.3e-58 227.6 124 88.7
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 6.9e-58 227.3 124 88.7
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 6.9e-58 227.3 124 88.7
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 1.2e-57 226.5 124 88.7
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 1.5e-57 226.1 124 87.9
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 1.5e-57 226.1 124 87.9
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 2.0e-57 225.7 123 88.6
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 2.6e-57 225.3 124 86.3
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 3.4e-57 224.9 124 86.3
Actinidia05844 Actinidia chinensis HOM05D002030 ORTHO05D026400 4.5e-57 224.6 124 87.1
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 4.5e-57 224.6 124 87.1
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 5.8e-57 224.2 123 87.8
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 7.6e-57 223.8 124 87.1
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 1.3e-56 223.0 124 87.1
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 2.2e-56 222.2 124 83.9
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 2.9e-56 221.9 124 84.7
TWI09G1279 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 2.9e-56 221.9 124 87.1
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 3.8e-56 221.5 124 85.5
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 3.8e-56 221.5 124 86.3
Dinv43938 Davidia involucrata HOM05D002030 ORTHO05D004391 4.9e-56 221.1 124 85.5
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 4.9e-56 221.1 124 86.3
SGA_v2.0_scaffold4G02232 Striga asiatica HOM05D002030 ORTHO05D004391 4.9e-56 221.1 124 84.7
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 4.9e-56 221.1 124 86.3
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 4.9e-56 221.1 123 86.2
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 6.5e-56 220.7 124 85.5
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 8.4e-56 220.3 124 85.5
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 1.1e-55 219.9 124 86.3
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 1.1e-55 219.9 124 84.7
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 1.1e-55 219.9 124 85.5
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 1.4e-55 219.5 124 85.5
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 1.4e-55 219.5 124 87.1
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.4e-55 219.5 124 85.5
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.4e-55 219.5 124 85.5
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 1.4e-55 219.5 123 86.2
Ciclev10031423m.g Citrus clementina HOM05D002030 ORTHO05D004391 1.9e-55 219.2 124 86.3
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 1.9e-55 219.2 124 84.7
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 1.9e-55 219.2 122 87.7
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 1.9e-55 219.2 121 85.1
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 3.2e-55 218.4 123 86.2
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 3.2e-55 218.4 121 86.0
TWI73G0973 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 3.2e-55 218.4 124 86.3
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 4.2e-55 218.0 123 84.6
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 4.2e-55 218.0 124 84.7
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 4.2e-55 218.0 123 86.2
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 4.2e-55 218.0 125 84.0
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 4.2e-55 218.0 123 84.6
CARHR139510 Cardamine hirsuta HOM05D002030 ORTHO05D004391 5.5e-55 217.6 124 84.7
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 5.5e-55 217.6 122 85.2
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 5.5e-55 217.6 124 83.1
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 5.5e-55 217.6 124 82.3
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 7.1e-55 217.2 124 84.7
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 7.1e-55 217.2 124 84.7
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 7.1e-55 217.2 124 84.7
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 7.1e-55 217.2 124 83.9
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 7.1e-55 217.2 124 83.9
Sc02g0003780 Simmondsia chinensis HOM05D002030 ORTHO05D004391 7.1e-55 217.2 124 83.9
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 9.3e-55 216.9 124 84.7
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 9.3e-55 216.9 124 84.7
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 9.3e-55 216.9 124 84.7
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 1.2e-54 216.5 124 84.7
Nn2g15681 Nelumbo nucifera HOM05D002030 ORTHO05D004391 1.2e-54 216.5 124 83.9
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 1.2e-54 216.5 124 83.1
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.6e-54 216.1 124 83.1
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 1.6e-54 216.1 124 82.3
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 1.6e-54 216.1 124 83.1
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 1.6e-54 216.1 124 83.9
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 2.1e-54 215.7 123 82.1
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.9
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.9
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.9
CSS0014563 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.9
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 82.3
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.9
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.9
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 2.1e-54 215.7 124 83.1
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 2.7e-54 215.3 124 84.7
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 2.7e-54 215.3 124 83.9
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 2.7e-54 215.3 124 83.9
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 3.5e-54 214.9 124 82.3
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 3.5e-54 214.9 124 82.3
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 3.5e-54 214.9 124 83.9
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 3.5e-54 214.9 124 83.1
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 4.6e-54 214.5 124 84.7
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 4.6e-54 214.5 124 83.9
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 4.6e-54 214.5 124 83.9
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 6.0e-54 214.2 124 83.9
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 6.0e-54 214.2 129 82.2
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 6.0e-54 214.2 124 86.3
CDE07G1107 Ceratophyllum demersum HOM05D002030 ORTHO05D028682 7.9e-54 213.8 124 80.6
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 7.9e-54 213.8 124 83.9
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 1.0e-53 213.4 124 83.9
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 1.0e-53 213.4 124 82.3
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 1.3e-53 213.0 122 82.8
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 1.3e-53 213.0 124 82.3
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.8e-53 212.6 125 81.6
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 1.8e-53 212.6 124 82.3
CDE06G2277 Ceratophyllum demersum HOM05D002030 ORTHO05D004391 3.9e-53 211.5 119 83.2
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 3.9e-53 211.5 124 82.3
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 3.9e-53 211.5 124 81.5
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 6.7e-53 210.7 123 82.9
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 6.7e-53 210.7 123 82.9
HPP92_022742 Vanilla planifolia HOM05D002030 ORTHO05D004391 1.1e-52 209.9 124 82.3
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.5e-52 209.5 117 85.5
Lsat_1_v5_gn_4_46541 Lactuca sativa HOM05D002030 ORTHO05D004391 1.5e-52 209.5 124 83.1
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 1.9e-52 209.1 123 82.1
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.9e-52 209.1 124 79.8
Atru.chr11.2703 Acer truncatum HOM05D002030 ORTHO05D004391 3.3e-52 208.4 124 81.5
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 3.3e-52 208.4 123 82.1
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.3e-52 208.4 124 80.6
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.3e-52 208.0 124 79.8
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 1.6e-51 206.1 123 81.3
EL10Ac9g21933 Beta vulgaris HOM05D002030 ORTHO05D004391 2.1e-51 205.7 124 80.6
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 2.1e-51 205.7 123 81.3
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 2.8e-51 205.3 124 79.8
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 6.2e-51 204.1 124 79.8
Sed0002541 Sechium edule HOM05D002030 ORTHO05D026400 8.2e-51 203.8 135 75.6
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 1.1e-50 203.4 117 83.8
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 9.0e-50 200.3 124 77.4
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.2e-49 199.9 117 81.2
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 1.5e-49 199.5 121 79.3
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 1.7e-48 196.1 124 77.4
Oeu000987.1 Olea europaea HOM05D002030 ORTHO05D004391 1.7e-48 196.1 124 75.8
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 1.1e-47 193.4 103 88.3
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 1.2e-46 189.9 121 75.2
Pp3c13_21410 Physcomitrium patens HOM05D002030 ORTHO05D004391 2.7e-46 188.7 123 70.7
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 7.9e-46 187.2 123 69.9
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 7.9e-46 187.2 123 69.9
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 1.0e-45 186.8 122 71.3
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 1.3e-45 186.4 122 70.5
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 2.3e-45 185.7 122 71.3
Medtr2g061630 Medicago truncatula HOM05D002030 ORTHO05D004391 2.3e-45 185.7 124 66.9
TPR.G16151 Trifolium pratense HOM05D002030 ORTHO05D004391 2.3e-45 185.7 122 68.9
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 6.7e-45 184.1 122 71.3
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 6.7e-45 184.1 122 69.7
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 8.7e-45 183.7 104 83.7
AagrBONN_evm.TU.Sc2ySwM_228.5639 Anthoceros agrestis HOM05D002030 ORTHO05D004391 1.9e-44 182.6 124 66.9
arahy.Tifrunner.gnm1.ann1.PFQ45M Arachis hypogaea HOM05D002030 ORTHO05D004391 1.9e-44 182.6 124 67.7
arahy.Tifrunner.gnm1.ann1.X24NYN Arachis hypogaea HOM05D002030 ORTHO05D004391 1.9e-44 182.6 124 67.7
Lalb_Chr25g0283641 Lupinus albus HOM05D002030 ORTHO05D004391 1.9e-44 182.6 123 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1175 Anthoceros agrestis HOM05D002030 ORTHO05D004391 2.5e-44 182.2 124 66.9
Psat1g127120 Pisum sativum HOM05D002030 ORTHO05D004391 3.3e-44 181.8 124 66.1
Pp3c1_40030 Physcomitrium patens HOM05D002030 ORTHO05D004391 4.8e-43 177.9 119 68.9
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 8.2e-43 177.2 105 78.1
Lalb_Chr20g0108201 Lupinus albus HOM05D002030 ORTHO05D004391 1.4e-42 176.4 123 64.2
SMO118G0428 Selaginella moellendorffii HOM05D002030 ORTHO05D004391 2.0e-41 172.6 118 69.5
Cre12.g514750 Chlamydomonas reinhardtii HOM05D002030 ORTHO05D004391 2.9e-40 168.7 122 63.9
CBR_g11008 Chara braunii HOM05D002030 ORTHO05D004391 4.2e-39 164.9 118 63.6
Mapoly0063s0010 Marchantia polymorpha HOM05D002030 ORTHO05D004391 7.2e-39 164.1 120 63.3
Mapoly0200s0007 Marchantia polymorpha HOM05D002030 ORTHO05D004391 1.6e-38 162.9 120 62.5
Mapoly0383s0001 Marchantia polymorpha HOM05D002030 ORTHO05D004391 2.1e-38 162.5 120 62.5
Mapoly0216s0011 Marchantia polymorpha HOM05D002030 ORTHO05D004391 6.1e-38 161.0 120 61.7
HanXRQChr16g0520361 Helianthus annuus HOM05D002030 ORTHO05D004391 1.0e-37 160.2 82 92.7
SGA_v2.0_scaffold95G28770 Striga asiatica HOM05D002030 ORTHO05D004391 1.8e-37 159.5 124 66.9
TAR636G2333 Trochodendron aralioides HOM05D002030 ORTHO05D004391 1.8e-37 159.5 83 92.8
Actinidia21583 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.7e-35 152.9 124 66.9
MCO01G768 Micromonas commoda HOM05D002030 ORTHO05D004391 1.4e-34 149.8 121 59.5
PRCOL_00005650 Prasinoderma coloniale HOM05D002030 ORTHO05D004391 1.4e-29 133.3 105 58.1
Cfa026498 Carpinus fangiana HOM05D002030 ORTHO05D004391 6.7e-29 131.0 108 54.6
HPP92_022773 Vanilla planifolia HOM05D002030 ORTHO05D004391 4.4e-28 128.3 124 58.1
BraA09t42224Z Brassica rapa HOM05D002030 ORTHO05D026400 5.7e-28 127.9 117 60.7
Cfa027058 Carpinus fangiana HOM05D002030 ORTHO05D004391 4.8e-27 124.8 122 50.0
Pp3c12_7330 Physcomitrium patens HOM05D002030 ORTHO05D004391 1.0e-21 107.1 60 76.7
Haze_26913 Corylus avellana HOM05D002030 ORTHO05D004391 5.2e-21 104.8 121 45.5
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 5.7e-20 101.3 104 55.8
TPR.G24648 Trifolium pratense HOM05D002030 ORTHO05D004391 5.7e-20 101.3 82 59.8
unitig_0.g1368 Utricularia gibba HOM05D002030 ORTHO05D004391 1.7e-16 89.7 83 59.0
AT2G11270 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 1.2e-06 57.0 34 79.4


User provided reference genes

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