Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 4.3e-71 271.2 132 100.0
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 3.4e-36 155.2 121 60.3
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 3.4e-36 155.2 119 63.0
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 2.9e-35 152.1 111 64.9
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 3.8e-35 151.8 119 59.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 6.5e-35 151.0 119 57.1
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 8.5e-35 150.6 122 58.2
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 1.4e-34 149.8 119 58.8
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 1.9e-34 149.4 119 58.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.9e-34 149.4 119 58.8
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.9e-34 149.4 122 57.4
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.5e-34 149.1 122 57.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 3.2e-34 148.7 119 58.0
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 3.2e-34 148.7 118 59.3
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 5.5e-34 147.9 107 63.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 5.5e-34 147.9 119 58.8
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.2e-34 147.5 119 57.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 9.3e-34 147.1 121 56.2
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 1.2e-33 146.7 118 59.3
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.6e-33 146.4 118 58.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.7e-33 145.6 119 57.1
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 2.7e-33 145.6 119 55.5
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 2.7e-33 145.6 119 58.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 3.6e-33 145.2 119 58.0
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 7.9e-33 144.1 118 55.1
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 7.9e-33 144.1 116 57.8
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 1.3e-32 143.3 118 58.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.3e-32 143.3 94 69.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 1.8e-32 142.9 116 58.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 1.8e-32 142.9 116 56.9
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 2.3e-32 142.5 118 56.8
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 3.9e-32 141.7 117 58.1
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 5.1e-32 141.4 116 56.0
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 8.7e-32 140.6 119 53.8
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 8.7e-32 140.6 102 62.7
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 1.1e-31 140.2 123 55.3
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 1.1e-31 140.2 98 66.3
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 1.9e-31 139.4 118 55.9
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.5e-31 139.0 119 53.8
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 2.5e-31 139.0 120 55.8
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.3e-31 138.7 98 65.3
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 3.3e-31 138.7 120 55.0
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 7.4e-31 137.5 120 56.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 2.2e-30 136.0 119 52.9
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 2.2e-30 136.0 97 61.9
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 2.2e-30 136.0 119 55.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 2.2e-30 136.0 114 56.1
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 3.7e-30 135.2 107 60.7
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 3.7e-30 135.2 126 51.6
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 6.3e-30 134.4 115 56.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 8.2e-30 134.0 119 52.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 1.1e-29 133.7 97 59.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 1.1e-29 133.7 116 56.0
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 1.4e-29 133.3 98 59.2
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 1.8e-29 132.9 99 64.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 2.4e-29 132.5 119 53.8
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 3.1e-29 132.1 100 61.0
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 4.1e-29 131.7 118 51.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 4.1e-29 131.7 117 54.7
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 4.1e-29 131.7 119 51.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 5.3e-29 131.3 108 53.7
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 5.3e-29 131.3 111 55.9
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 6.9e-29 131.0 123 51.2
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 9.1e-29 130.6 98 63.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 9.1e-29 130.6 99 62.6
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.2e-28 130.2 118 50.8
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 1.5e-28 129.8 98 59.2
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.0e-28 129.4 98 58.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 2.0e-28 129.4 98 58.2
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 2.0e-28 129.4 113 57.5
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 2.6e-28 129.0 119 52.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 2.6e-28 129.0 125 52.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 2.6e-28 129.0 100 59.0
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 3.4e-28 128.6 120 52.5
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 4.5e-28 128.3 97 58.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.5e-28 128.3 93 61.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 4.5e-28 128.3 93 61.3
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.0e-27 127.1 116 52.6
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 1.0e-27 127.1 118 54.2
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 1.0e-27 127.1 118 55.1
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.3e-27 126.7 94 63.8
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 1.3e-27 126.7 118 52.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 2.2e-27 125.9 120 50.8
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 5.0e-27 124.8 118 49.2
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 6.5e-27 124.4 97 58.8
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 6.5e-27 124.4 115 54.8
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 6.5e-27 124.4 117 52.1
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 6.5e-27 124.4 93 60.2
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 8.5e-27 124.0 106 56.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 3.2e-26 122.1 97 56.7
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 7.2e-26 120.9 118 51.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.2e-26 120.9 116 52.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 1.6e-25 119.8 111 50.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 2.7e-25 119.0 93 57.0
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 2.7e-25 119.0 93 57.0
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 4.7e-25 118.2 115 48.7
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 4.7e-25 118.2 105 52.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 6.1e-25 117.9 116 50.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 1.4e-24 116.7 117 51.3
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.4e-24 116.7 100 60.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 1.8e-24 116.3 97 51.5
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 2.3e-24 115.9 95 55.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 3.0e-24 115.5 95 55.8
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 3.9e-24 115.2 105 52.4
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 3.3e-23 112.1 81 66.7
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.4e-23 111.7 90 62.2
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 7.4e-23 110.9 89 59.6
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 7.4e-23 110.9 98 54.1
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 1.3e-22 110.2 86 61.6
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.2e-22 109.4 109 51.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 2.2e-22 109.4 111 48.6
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 8.2e-22 107.5 93 52.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 3.1e-21 105.5 105 54.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 9.1e-21 104.0 109 53.2
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 4.5e-20 101.7 111 55.0
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 4.5e-20 101.7 103 56.3
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 5.9e-20 101.3 79 57.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 1.3e-19 100.1 109 51.4
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 1.3e-19 100.1 110 51.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 1.3e-19 100.1 105 53.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 5.0e-19 98.2 109 51.4
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 1.4e-18 96.7 102 51.0
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 1.9e-18 96.3 98 52.0
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 1.9e-18 96.3 98 52.0
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 1.9e-18 96.3 98 52.0
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 1.9e-18 96.3 98 52.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 1.9e-18 96.3 109 49.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 4.2e-18 95.1 116 45.7
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 4.2e-18 95.1 116 45.7
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 1.2e-17 93.6 114 44.7
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 1.2e-17 93.6 114 44.7
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 1.2e-17 93.6 114 44.7
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-13 79.3 89 49.4
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.9e-11 72.4 113 33.6
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.9e-10 69.7 69 53.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.9e-10 69.7 74 43.2
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.3e-06 57.0 72 43.1
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.3e-06 57.0 86 38.4


User provided reference genes

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