Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 5.1e-152 541.2 304 100.0
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.4e-64 250.8 276 54.3
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 4.4e-63 245.7 329 49.8
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.5e-60 236.1 274 52.6
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.3e-58 229.6 255 52.9
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.3e-57 227.6 304 43.8
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 6.2e-57 225.3 354 42.9
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.1e-56 224.6 271 50.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 9.0e-56 221.5 322 45.3
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 3.4e-55 219.5 291 46.7
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 4.5e-55 219.2 292 43.8
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 7.6e-55 218.4 290 48.6
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 1.7e-54 217.2 368 42.7
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.7e-54 217.2 328 44.8
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.4e-53 214.2 291 47.1
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 5.4e-53 212.2 248 51.6
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 5.4e-53 212.2 259 52.5
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 9.3e-53 211.5 252 51.2
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 2.1e-52 210.3 300 44.0
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.1e-52 210.3 294 46.9
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 2.7e-52 209.9 362 39.8
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 1.8e-51 207.2 349 40.4
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.8e-51 207.2 291 47.8
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 2.3e-51 206.8 291 47.8
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 2.3e-51 206.8 282 47.9
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 3.0e-51 206.5 291 44.7
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 5.1e-51 205.7 323 43.3
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.1e-50 204.5 287 47.4
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 1.5e-50 204.1 294 45.9
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.9e-50 203.8 387 38.5
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 2.5e-50 203.4 377 39.8
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 2.5e-50 203.4 337 41.8
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 4.3e-50 202.6 256 48.4
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 4.3e-50 202.6 249 49.8
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 9.6e-50 201.4 259 49.0
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.3e-49 201.1 284 46.5
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.6e-49 200.7 254 48.8
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.6e-49 200.7 394 40.9
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 2.8e-49 199.9 293 46.1
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.8e-49 199.9 250 49.2
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 4.8e-49 199.1 233 50.2
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 6.2e-49 198.7 337 40.9
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 8.1e-49 198.4 302 44.7
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 1.1e-48 198.0 405 37.3
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.1e-48 198.0 329 41.9
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 2.4e-48 196.8 301 46.5
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 2.4e-48 196.8 376 40.7
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 2.4e-48 196.8 258 48.8
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 3.1e-48 196.4 276 42.4
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 4.0e-48 196.1 294 45.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 4.0e-48 196.1 403 37.0
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 9.0e-48 194.9 300 44.0
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.5e-47 194.1 276 44.2
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.5e-47 194.1 213 53.1
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-47 194.1 255 49.4
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.6e-47 193.4 272 45.6
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 4.5e-47 192.6 308 41.9
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 7.6e-47 191.8 317 41.3
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.0e-46 191.4 396 38.1
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 1.0e-46 191.4 304 43.8
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.3e-46 191.0 312 47.8
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.7e-46 190.7 285 43.2
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 2.2e-46 190.3 293 44.0
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 3.8e-46 189.5 286 44.8
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 4.9e-46 189.1 298 43.3
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 6.5e-46 188.7 294 42.9
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 1.1e-45 188.0 345 40.3
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.4e-45 187.6 293 43.3
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.4e-45 187.6 293 43.3
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.9e-45 187.2 274 46.7
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.2e-45 186.4 213 52.1
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 3.2e-45 186.4 298 44.6
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 4.2e-45 186.0 335 39.4
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 7.1e-45 185.3 274 45.6
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 9.3e-45 184.9 274 45.6
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 9.3e-45 184.9 300 44.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 2.1e-44 183.7 320 41.6
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.1e-44 183.7 297 43.1
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 2.7e-44 183.3 251 46.6
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.6e-44 182.6 293 43.0
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 1.0e-43 181.4 253 45.1
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 3.9e-43 179.5 358 37.7
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 8.7e-43 178.3 361 38.8
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 8.7e-43 178.3 360 38.3
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 5.7e-42 175.6 270 44.8
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 7.4e-42 175.3 388 37.1
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.6e-41 174.1 259 45.9
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 9.0e-40 168.3 260 42.7
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 5.8e-39 165.6 151 56.3
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 7.6e-39 165.2 153 55.6
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.0e-38 164.9 284 39.1
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.3e-38 164.5 238 43.3
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.7e-38 164.1 295 41.7
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 5.0e-38 162.5 402 33.3
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 6.5e-38 162.2 210 47.6
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.4e-37 161.0 231 47.2
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 3.2e-37 159.8 251 41.4
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.2e-37 159.5 213 46.5
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 9.3e-37 158.3 255 40.8
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 4.6e-36 156.0 342 40.6
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 2.3e-35 153.7 198 46.0
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 3.0e-35 153.3 286 38.1
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 3.9e-35 152.9 303 37.3
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 8.7e-35 151.8 288 38.2
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-34 151.0 160 55.0
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.4e-32 144.4 148 52.0
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 2.4e-32 143.7 422 30.8
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.4e-32 143.7 250 39.6
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 5.3e-32 142.5 193 48.2
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 3.4e-31 139.8 226 41.2
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 6.5e-30 135.6 211 42.7
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.1e-29 134.8 175 48.0
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.4e-29 134.4 209 45.9
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.1e-26 124.8 194 40.2
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.0e-26 124.0 145 49.0
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.0e-26 124.0 180 46.7
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 5.7e-26 122.5 248 37.1
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 2.2e-25 120.6 195 41.0
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 2.8e-25 120.2 291 32.6
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.7e-22 110.9 124 49.2
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 8.5e-22 108.6 327 31.2
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 7.2e-21 105.5 151 47.0
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.2e-20 104.8 276 35.1
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 4.7e-20 102.8 120 45.0
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.5e-10 71.2 69 53.6
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 2.6e-10 70.5 71 54.9
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 3.3e-10 70.1 128 34.4


User provided reference genes

Program Settings