Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.8e-98 362.5 168 100.0
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 2.4e-50 202.6 166 62.7
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 3.1e-50 202.2 166 62.0
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 5.3e-50 201.4 166 61.4
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 1.5e-49 199.9 159 58.5
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 2.6e-49 199.1 166 60.2
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 4.5e-49 198.4 163 60.7
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 1.3e-48 196.8 163 58.9
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 2.2e-48 196.1 161 59.6
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 3.8e-48 195.3 163 60.1
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 5.0e-48 194.9 161 61.5
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 1.1e-47 193.7 165 61.2
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 1.4e-47 193.4 163 58.3
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 1.9e-47 193.0 154 63.6
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 2.5e-47 192.6 161 60.2
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 3.2e-47 192.2 161 59.6
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 3.2e-47 192.2 162 59.3
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 4.2e-47 191.8 163 59.5
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 4.2e-47 191.8 160 58.1
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 7.2e-47 191.0 165 58.2
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.6e-46 189.9 159 55.3
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 2.1e-46 189.5 164 59.8
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 2.1e-46 189.5 163 58.3
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.7e-46 189.1 159 58.5
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.0e-45 187.2 159 57.9
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.0e-45 187.2 162 58.0
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 1.0e-45 187.2 162 56.8
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 1.4e-45 186.8 162 56.8
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 1.8e-45 186.4 162 56.8
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 8.8e-45 184.1 159 57.9
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.1e-44 183.7 159 59.1
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 3.3e-44 182.2 159 58.5
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 3.3e-44 182.2 191 50.8
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 7.4e-44 181.0 159 58.5
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 9.7e-44 180.6 159 53.5
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 9.7e-44 180.6 166 55.4
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 9.7e-44 180.6 170 52.9
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.7e-43 179.9 164 56.1
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.7e-43 179.9 161 58.4
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.7e-43 179.9 167 56.3
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 2.2e-43 179.5 159 56.0
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 2.8e-43 179.1 141 63.1
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 3.7e-43 178.7 159 57.2
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 4.8e-43 178.3 160 56.9
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 4.8e-43 178.3 165 56.4
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 8.2e-43 177.6 159 57.2
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 4.1e-42 175.3 159 55.3
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.6e-41 173.3 159 53.5
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 2.6e-41 172.6 163 54.0
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 4.5e-41 171.8 164 54.3
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 7.7e-41 171.0 164 54.3
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.3e-40 170.2 190 51.1
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 6.5e-40 167.9 165 54.5
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 1.1e-39 167.2 173 50.9
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 6.1e-38 161.4 137 56.9
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 1.0e-37 160.6 133 57.1
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 4.0e-37 158.7 131 58.0
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 4.0e-37 158.7 128 61.7
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 6.7e-37 157.9 141 56.0
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.1e-36 157.1 165 50.3
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 1.1e-36 157.1 157 52.2
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 3.3e-36 155.6 156 51.3
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.1e-34 150.6 134 56.0
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 2.4e-34 149.4 130 56.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 4.1e-34 148.7 135 57.8
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 9.1e-34 147.5 164 50.0
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 1.5e-31 140.2 129 57.4
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.9e-31 139.8 131 55.0
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 4.2e-31 138.7 126 57.1
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.3e-27 127.1 162 45.7
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 1.8e-26 123.2 173 38.7
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 2.7e-25 119.4 105 53.3
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.7e-24 116.7 159 42.8
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 8.5e-24 114.4 94 56.4
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.6e-22 110.2 79 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.0e-21 107.5 187 33.2
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 9.8e-20 100.9 84 65.5
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.4e-18 97.1 133 43.6
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 1.2e-17 94.0 79 54.4
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 5.6e-15 85.1 80 57.5
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.2e-06 57.4 142 31.7


User provided reference genes

Program Settings