Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G019 Amborella trichopoda HOM05D001611 ORTHO05D001464 2.3e-38 161.8 81 100.0
MBI01_g36429_MAGBIO Magnolia biondii HOM05D001611 ORTHO05D001464 4.9e-17 90.9 66 60.6
PSO339G2796 Papaver somniferum HOM05D001611 ORTHO05D001464 1.4e-16 89.4 62 71.0
PSO384G4669 Papaver somniferum HOM05D001611 ORTHO05D001464 3.2e-16 88.2 62 69.4
Nn2g15496 Nelumbo nucifera HOM05D001611 ORTHO05D001464 1.0e-14 83.2 58 69.0
HPP92_017823 Vanilla planifolia HOM05D001611 ORTHO05D001464 1.7e-14 82.4 60 61.7
HPP92_017834 Vanilla planifolia HOM05D001611 ORTHO05D001464 1.7e-14 82.4 60 61.7
TAR633G0901 Trochodendron aralioides HOM05D001611 ORTHO05D001464 1.5e-13 79.3 68 55.9
Os12g0506400 Oryza sativa ssp. japonica HOM05D001611 ORTHO05D001464 1.9e-13 79.0 61 62.3
Pp3c7_11500 Physcomitrium patens HOM05D001611 ORTHO05D001464 9.5e-13 76.6 63 58.7
Mapoly0124s0019 Marchantia polymorpha HOM05D001611 ORTHO05D001464 2.8e-12 75.1 60 61.7
Zm00001eb264160 Zea mays HOM05D001611 ORTHO05D001464 2.8e-12 75.1 57 64.9
CSS0037389 Camellia sinensis var. sinensis HOM05D001611 ORTHO05D001464 3.6e-12 74.7 55 60.0
CDE04G2774 Ceratophyllum demersum HOM05D001611 ORTHO05D001464 4.7e-12 74.3 54 61.1
Actinidia17251 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.4e-11 72.8 55 60.0
Gohir.D09G122200 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.4e-11 72.8 67 59.7
Gohir.A09G125200 Gossypium hirsutum HOM05D001611 ORTHO05D001464 6.8e-11 70.5 67 58.2
Pp3c11_17020 Physcomitrium patens HOM05D001611 ORTHO05D001464 6.8e-11 70.5 63 54.0
CSS0009605 Camellia sinensis var. sinensis HOM05D001611 ORTHO05D001464 1.2e-10 69.7 57 52.6
TAR369G0875 Trochodendron aralioides HOM05D001611 ORTHO05D001464 1.2e-10 69.7 73 47.9
CAN.G415.4 Capsicum annuum HOM05D001611 ORTHO05D001464 3.4e-10 68.2 68 45.6
ECA236G0731 Erigeron canadensis HOM05D001611 ORTHO05D001464 3.4e-10 68.2 55 58.2
Gorai.006G140000 Gossypium raimondii HOM05D001611 ORTHO05D001464 3.4e-10 68.2 59 61.0
Nn2g16004 Nelumbo nucifera HOM05D001611 ORTHO05D001464 3.4e-10 68.2 45 71.1
Duzib093G2166 Durio zibethinus HOM05D001611 ORTHO05D001464 4.4e-10 67.8 70 55.7
CsaV3_4G031560 Cucumis sativus L. HOM05D001611 ORTHO05D001464 7.5e-10 67.0 61 54.1
MBI04_g14255_MAGBIO Magnolia biondii HOM05D001611 ORTHO05D001464 7.5e-10 67.0 47 66.0
EL10Ac3g06982 Beta vulgaris HOM05D001611 ORTHO05D001464 1.3e-09 66.2 62 53.2
Glyma.02G175400 Glycine max HOM05D001611 ORTHO05D001464 1.3e-09 66.2 59 55.9
Glyma.10G093400 Glycine max HOM05D001611 ORTHO05D001464 1.3e-09 66.2 59 55.9
Hund24756 Selenicereus undatus HOM05D001611 ORTHO05D001464 1.3e-09 66.2 69 47.8
Aqoxy2G00113 Aquilegia oxysepala HOM05D001611 ORTHO05D001464 1.7e-09 65.9 60 53.3
Phvul.001G138400 Phaseolus vulgaris HOM05D001611 ORTHO05D001464 1.7e-09 65.9 59 49.2
MSTRG.10831 Avicennia marina HOM05D001611 ORTHO05D001464 2.2e-09 65.5 67 52.2
CANSAT80G2415 Cannabis sativa HOM05D001611 ORTHO05D001464 2.2e-09 65.5 54 48.1
Medtr7g092530 Medicago truncatula HOM05D001611 ORTHO05D001464 2.2e-09 65.5 59 54.2
Cpa.g.sc85.119 Carica papaya HOM05D001611 ORTHO05D001464 2.9e-09 65.1 61 50.8
PGR004G1477 Punica granatum HOM05D001611 ORTHO05D001464 2.9e-09 65.1 59 52.5
Sed0007317 Sechium edule HOM05D001611 ORTHO05D001464 2.9e-09 65.1 59 52.5
Nitab4.5_0000016g0010 Nicotiana tabacum HOM05D001611 ORTHO05D001464 3.7e-09 64.7 58 50.0
Oeu033758.1 Olea europaea HOM05D001611 ORTHO05D001464 3.7e-09 64.7 59 49.2
Peaxi162Scf00285g00224 Petunia axillaris HOM05D001611 ORTHO05D001464 3.7e-09 64.7 68 45.6
vmacro09096 Vaccinium macrocarpon HOM05D001611 ORTHO05D001464 3.7e-09 64.7 53 58.5
CANSAT80G2271 Cannabis sativa HOM05D001611 ORTHO05D001464 4.9e-09 64.3 54 48.1
Lalb_Chr25g0287561 Lupinus albus HOM05D001611 ORTHO05D001464 4.9e-09 64.3 59 55.9
Nitab4.5_0008022g0040 Nicotiana tabacum HOM05D001611 ORTHO05D001464 4.9e-09 64.3 58 50.0
SEGI_34594 Sequoiadendron giganteum HOM05D001611 ORTHO05D001464 4.9e-09 64.3 58 55.2
COL.COLO4_28735 Corchorus olitorius HOM05D001611 ORTHO05D001464 6.4e-09 63.9 62 51.6
Psat3g070360 Pisum sativum HOM05D001611 ORTHO05D001464 6.4e-09 63.9 59 55.9
Sp3g10420 Schrenkiella parvula HOM05D001611 ORTHO05D001464 6.4e-09 63.9 59 52.5
CARHR086760 Cardamine hirsuta HOM05D001611 ORTHO05D001464 8.3e-09 63.5 59 50.8
Thhalv10021709m.g Eutrema salsugineum HOM05D001611 ORTHO05D001464 8.3e-09 63.5 59 52.5
Potri.016G051000 Populus trichocarpa HOM05D001611 ORTHO05D001464 1.1e-08 63.2 61 47.5
C01p53120 Brassica napus HOM05D003863 ORTHO05D004372 1.4e-08 62.8 59 50.8
THA.LOC104809920 Tarenaya hassleriana HOM05D001611 ORTHO05D001464 1.4e-08 62.8 59 52.5
Ah.04g152050 Amaranthus hybridus HOM05D036344 ORTHO05D038209 1.9e-08 62.4 55 56.4
Glyma.19G144000 Glycine max HOM05D001611 ORTHO05D001464 1.9e-08 62.4 45 57.8
Phvul.007G256900 Phaseolus vulgaris HOM05D001611 ORTHO05D001464 1.9e-08 62.4 59 52.5
Aa31LG3G6400 Aethionema arabicum HOM05D001611 ORTHO05D001464 2.4e-08 62.0 59 50.8
BcaC05g29274 Brassica carinata HOM05D001611 ORTHO05D001464 2.4e-08 62.0 59 50.8
BcaC09g48222 Brassica carinata HOM05D003863 ORTHO05D004372 2.4e-08 62.0 59 49.2
BolC1t05257H Brassica oleracea HOM05D001611 ORTHO05D001464 2.4e-08 62.0 59 49.2
BolC5t34224H Brassica oleracea HOM05D001611 ORTHO05D001464 2.4e-08 62.0 59 50.8
BraA05t22510Z Brassica rapa HOM05D001611 ORTHO05D001464 2.4e-08 62.0 59 50.8
GSVIVG01033351001 Vitis vinifera HOM05D001611 ORTHO05D001464 2.4e-08 62.0 57 47.4
BcaB04g21091 Brassica carinata HOM05D003863 ORTHO05D004372 3.2e-08 61.6 59 49.2
CBR_g18650 Chara braunii HOM05D001611 ORTHO05D001464 3.2e-08 61.6 59 49.2
Thecc.05G165500 Theobroma cacao HOM05D001611 ORTHO05D001464 3.2e-08 61.6 59 49.2
Carub.0003s1155 Capsella rubella HOM05D001611 ORTHO05D001464 4.1e-08 61.2 59 49.2
CiPaw.10G029400 Carya illinoinensis HOM05D001611 ORTHO05D001464 4.1e-08 61.2 61 45.9
Potri.006G057300 Populus trichocarpa HOM05D001611 ORTHO05D001464 4.1e-08 61.2 59 49.2
TPR.G4708 Trifolium pratense HOM05D001611 ORTHO05D001464 4.1e-08 61.2 59 52.5
Rhsim04G0099200 Rhododendron simsii HOM05D001611 ORTHO05D001464 5.4e-08 60.8 55 52.7
TPR.G25629 Trifolium pratense HOM05D001611 ORTHO05D001464 5.4e-08 60.8 61 49.2
HanXRQChr06g0176351 Helianthus annuus HOM05D001611 ORTHO05D001464 7.1e-08 60.5 55 52.7
Hma1.2p1_0856F.1_g229070 Hydrangea macrophylla HOM05D001611 ORTHO05D001464 7.1e-08 60.5 43 62.8
Psat6g072480 Pisum sativum HOM05D001611 ORTHO05D001464 7.1e-08 60.5 62 50.0
SGA_v2.0_scaffold273G46447 Striga asiatica HOM05D001611 ORTHO05D001464 7.1e-08 60.5 70 44.3
arahy.Tifrunner.gnm1.ann1.8UK8SV Arachis hypogaea HOM05D001611 ORTHO05D001464 9.2e-08 60.1 65 46.2
arahy.Tifrunner.gnm1.ann1.AK4DPW Arachis hypogaea HOM05D001611 ORTHO05D001464 9.2e-08 60.1 47 55.3
arahy.Tifrunner.gnm1.ann1.E8Y1RF Arachis hypogaea HOM05D001611 ORTHO05D001464 9.2e-08 60.1 47 55.3
SalBow1G6798 Salvia bowleyana HOM05D001611 ORTHO05D001464 9.2e-08 60.1 57 47.4
SalBow1G7576 Salvia bowleyana HOM05D001611 ORTHO05D001464 9.2e-08 60.1 57 47.4
Dinv24112 Davidia involucrata HOM05D001611 ORTHO05D001464 1.2e-07 59.7 45 57.8
arahy.Tifrunner.gnm1.ann1.NTM09G Arachis hypogaea HOM05D001611 ORTHO05D001464 1.6e-07 59.3 49 55.1
Eucgr.A02414 Eucalyptus grandis HOM05D001611 ORTHO05D001464 1.6e-07 59.3 60 50.0
QL07p022315 Quercus lobata HOM05D001611 ORTHO05D001464 1.6e-07 59.3 59 47.5
QL93p1910_0004 Quercus lobata HOM05D001611 ORTHO05D001464 1.6e-07 59.3 59 47.5
AL3G23860 Arabidopsis lyrata HOM05D001611 ORTHO05D001464 2.1e-07 58.9 59 47.5
AT3G12180 Arabidopsis thaliana HOM05D001611 ORTHO05D001464 2.1e-07 58.9 59 49.2
Haze_19926 Corylus avellana HOM05D001611 ORTHO05D001464 2.1e-07 58.9 59 49.2
Lju124A33T33 Lonicera japonica HOM05D001611 ORTHO05D001464 2.7e-07 58.5 43 60.5
Lsat_1_v5_gn_8_79420 Lactuca sativa HOM05D001611 ORTHO05D001464 3.5e-07 58.2 42 61.9
Manes.09G030700 Manihot esculenta HOM05D001611 ORTHO05D001464 3.5e-07 58.2 58 44.8
Dinv18103 Davidia involucrata HOM05D001611 ORTHO05D001464 4.6e-07 57.8 41 61.0
Cc00_g22700 Coffea canephora HOM05D001611 ORTHO05D001464 6.0e-07 57.4 52 51.9
ClCG04G000520 Citrullus lanatus HOM05D001611 ORTHO05D001464 7.8e-07 57.0 50 52.0
Atru.chr1.944 Acer truncatum HOM05D001611 ORTHO05D001464 1.0e-06 56.6 57 43.9
VMungo1383G1483 Vigna mungo HOM05D001611 ORTHO05D001464 1.3e-06 56.2 44 52.3
Lj5g0003236 Lotus japonicus HOM05D001611 ORTHO05D001464 1.7e-06 55.8 45 53.3
MD14G1064100 Malus domestica HOM05D001611 ORTHO05D001464 1.7e-06 55.8 54 48.1
Aqoxy1G00301 Aquilegia oxysepala HOM05D001611 ORTHO05D001464 2.3e-06 55.5 60 46.7
MELO3C009082.2 Cucumis melo HOM05D001611 ORTHO05D001464 2.3e-06 55.5 46 54.3
Sabra06G0040400 Salix brachista HOM05D001611 ORTHO05D001464 2.3e-06 55.5 75 36.0
Sc25g0005190 Simmondsia chinensis HOM05D001611 ORTHO05D001464 2.3e-06 55.5 45 55.6
Sopen03g017630 Solanum pennellii HOM05D001611 ORTHO05D001464 2.3e-06 55.5 53 47.2
Cpa.g.sc29.77 Carica papaya HOM05D001611 ORTHO05D001464 3.0e-06 55.1 72 41.7
ClCG00G001000 Citrullus lanatus HOM05D001611 ORTHO05D001464 3.0e-06 55.1 60 48.3
ClCG00G004810 Citrullus lanatus HOM05D001611 ORTHO05D001464 3.0e-06 55.1 60 48.3
ClCG10G003230 Citrullus lanatus HOM05D001611 ORTHO05D001464 3.0e-06 55.1 60 48.3
Sed0027784 Sechium edule HOM05D001611 ORTHO05D001464 3.0e-06 55.1 72 43.1
Solyc03g063970.3 Solanum lycopersicum HOM05D001611 ORTHO05D001464 3.0e-06 55.1 53 47.2
HanXRQChr10g0291881 Helianthus annuus HOM05D001611 ORTHO05D001464 5.1e-06 54.3 45 57.8
Sed0012862 Sechium edule HOM05D001611 ORTHO05D001464 5.1e-06 54.3 47 55.3
Lsat_1_v5_gn_9_28441 Lactuca sativa HOM05D001611 ORTHO05D001464 6.6e-06 53.9 53 49.1
vmacro14038 Vaccinium macrocarpon HOM05D001611 ORTHO05D001464 8.6e-06 53.5 66 43.9


User provided reference genes

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