Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G005 Amborella trichopoda HOM05D001620 ORTHO05D005461 1.4e-56 222.6 108 100.0
ATR0605G201 Amborella trichopoda HOM05D001620 ORTHO05D005461 8.2e-44 180.3 107 85.0
Eucgr.H05004 Eucalyptus grandis HOM05D001620 ORTHO05D005461 1.4e-19 99.8 99 46.5
TAR376G0870 Trochodendron aralioides HOM05D001620 ORTHO05D005461 2.0e-18 95.9 96 54.2
Nn6g31636 Nelumbo nucifera HOM05D001620 ORTHO05D005461 4.5e-18 94.7 90 52.2
PSO541G2761 Papaver somniferum HOM05D001620 ORTHO05D005461 1.3e-17 93.2 99 51.5
PSO675G1501 Papaver somniferum HOM05D001620 ORTHO05D005461 1.7e-17 92.8 99 51.5
Dinv14184 Davidia involucrata HOM05D001620 ORTHO05D005461 2.9e-17 92.0 101 48.5
GSVIVG01023856001 Vitis vinifera HOM05D001620 ORTHO05D005461 1.9e-16 89.4 100 48.0
Prupe.8G182100 Prunus persica HOM05D001620 ORTHO05D005461 4.2e-16 88.2 85 50.6
Gohir.A03G170100 Gossypium hirsutum HOM05D001620 ORTHO05D005461 9.4e-16 87.0 103 43.7
MD10G1143100 Malus domestica HOM05D001620 ORTHO05D005461 9.4e-16 87.0 101 43.6
Rhsim07G0221500 Rhododendron simsii HOM05D001620 ORTHO05D005461 9.4e-16 87.0 99 45.5
Actinidia17986 Actinidia chinensis HOM05D001620 ORTHO05D005461 1.2e-15 86.7 96 46.9
MBI01_g28400_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D005461 1.2e-15 86.7 88 50.0
Gohir.D02G193200 Gossypium hirsutum HOM05D001620 ORTHO05D005461 1.6e-15 86.3 103 43.7
Gorai.005G216000 Gossypium raimondii HOM05D001620 ORTHO05D005461 1.6e-15 86.3 103 43.7
QL11p056803 Quercus lobata HOM05D001620 ORTHO05D005461 2.7e-15 85.5 81 49.4
Lj5P170T30 Lonicera japonica HOM05D001620 ORTHO05D005461 3.6e-15 85.1 100 43.0
DCAR_029911 Daucus carota HOM05D001620 ORTHO05D005461 6.1e-15 84.3 104 43.3
Ciclev10029031m.g Citrus clementina HOM05D001620 ORTHO05D005461 1.4e-14 83.2 80 45.0
ClCG02G003250 Citrullus lanatus HOM05D001620 ORTHO05D005461 3.0e-14 82.0 103 42.7
Thecc.02G148000 Theobroma cacao HOM05D001620 ORTHO05D005461 5.2e-14 81.3 96 43.8
CAN.G234.1 Capsicum annuum HOM05D001620 ORTHO05D005461 6.7e-14 80.9 99 44.4
Cfa005393 Carpinus fangiana HOM05D001620 ORTHO05D005461 6.7e-14 80.9 78 50.0
RcHm_v2.0_Chr6g0281221 Rosa chinensis HOM05D001620 ORTHO05D005461 8.8e-14 80.5 92 46.7
FAN15G2752 Fragaria x ananassa HOM05D001620 ORTHO05D005461 2.0e-13 79.3 86 45.3
Hma1.2p1_0619F.1_g190430 Hydrangea macrophylla HOM05D001620 ORTHO05D005461 2.0e-13 79.3 95 45.3
Sed0027002 Sechium edule HOM05D001620 ORTHO05D005461 2.0e-13 79.3 103 39.8
Haze_01957 Corylus avellana HOM05D001620 ORTHO05D005461 2.6e-13 79.0 78 48.7
Manes.15G113700 Manihot esculenta HOM05D001620 ORTHO05D005461 3.3e-13 78.6 106 40.6
COL.COLO4_03849 Corchorus olitorius HOM05D001620 ORTHO05D005461 5.7e-13 77.8 95 43.2
SalBow1G8418 Salvia bowleyana HOM05D001620 ORTHO05D005461 5.7e-13 77.8 101 35.6
CDE08G0732 Ceratophyllum demersum HOM05D001619 ORTHO05D001541 9.7e-13 77.0 103 38.8
Cc00_g29970 Coffea canephora HOM05D001620 ORTHO05D005461 9.7e-13 77.0 107 40.2
HPP92_015473 Vanilla planifolia HOM05D002051 ORTHO05D002041 1.3e-12 76.6 94 45.7
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 1.7e-12 76.3 107 39.3
CiPaw.05G094900 Carya illinoinensis HOM05D001620 ORTHO05D005461 2.8e-12 75.5 90 44.4
CsaV3_7G002140 Cucumis sativus L. HOM05D001620 ORTHO05D005461 2.8e-12 75.5 101 39.6
Lsat_1_v5_gn_4_71240 Lactuca sativa HOM05D001620 ORTHO05D005461 2.8e-12 75.5 100 38.0
Solyc10g074600.3 Solanum lycopersicum HOM05D001620 ORTHO05D005461 3.7e-12 75.1 97 42.3
Aqoxy6G02985 Aquilegia oxysepala HOM05D001620 ORTHO05D005461 4.8e-12 74.7 92 43.5
Nitab4.5_0008172g0010 Nicotiana tabacum HOM05D001620 ORTHO05D005461 4.8e-12 74.7 103 39.8
Sp6g34000 Schrenkiella parvula HOM05D001620 ORTHO05D005461 4.8e-12 74.7 100 39.0
Zm00001eb079800 Zea mays HOM05D001620 ORTHO05D005461 4.8e-12 74.7 87 41.4
HanXRQChr03g0093541 Helianthus annuus HOM05D001620 ORTHO05D005461 6.3e-12 74.3 95 37.9
MSTRG.16958 Avicennia marina HOM05D001620 ORTHO05D005461 8.2e-12 73.9 88 36.4
Os04g0475500 Oryza sativa ssp. japonica HOM05D001620 ORTHO05D005461 8.2e-12 73.9 87 40.2
Sopen10g027090 Solanum pennellii HOM05D001620 ORTHO05D005461 8.2e-12 73.9 97 42.3
Atru.chr5.3578 Acer truncatum HOM05D001620 ORTHO05D005461 1.4e-11 73.2 108 34.3
Sc18g0005700 Simmondsia chinensis HOM05D001620 ORTHO05D005461 1.8e-11 72.8 89 41.6
Peaxi162Scf00374g00732 Petunia axillaris HOM05D001620 ORTHO05D005461 2.4e-11 72.4 96 40.6
THA.LOC104800065 Tarenaya hassleriana HOM05D001620 ORTHO05D005461 2.4e-11 72.4 95 38.9
MELO3C015694.2 Cucumis melo HOM05D001620 ORTHO05D005461 3.1e-11 72.0 103 37.9
FAN27G0152 Fragaria x ananassa HOM05D001620 ORTHO05D005461 3.1e-11 72.0 86 43.0
Migut.B00943 Erythranthe guttata HOM05D001620 ORTHO05D005461 5.3e-11 71.2 95 35.8
Nitab4.5_0001700g0020 Nicotiana tabacum HOM05D001620 ORTHO05D005461 7.0e-11 70.9 103 38.8
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 9.1e-11 70.5 97 36.1
PGSC0003DMG400016831 Solanum tuberosum HOM05D001620 ORTHO05D005461 1.2e-10 70.1 87 43.7
AL6G19720 Arabidopsis lyrata HOM05D001620 ORTHO05D005461 3.5e-10 68.6 107 35.5
AT5G09315 Arabidopsis thaliana HOM05D001620 ORTHO05D005461 1.0e-09 67.0 107 33.6
SEGI_37669 Sequoiadendron giganteum HOM05D001620 ORTHO05D005461 1.0e-09 67.0 87 34.5
SGA_v2.0_scaffold104G30256 Striga asiatica HOM05D001620 ORTHO05D005461 1.0e-09 67.0 76 36.8
TWI79G0573 Tripterygium wilfordii HOM05D001620 ORTHO05D005461 2.2e-09 65.9 91 39.6
BcaB08g37218 Brassica carinata HOM05D001620 ORTHO05D005461 2.9e-09 65.5 97 36.1
Potri.009G169600 Populus trichocarpa HOM05D001620 ORTHO05D005461 3.8e-09 65.1 104 35.6
Sabra09G0131500 Salix brachista HOM05D001620 ORTHO05D005461 8.5e-09 63.9 104 35.6
Prupe.1G201600 Prunus persica HOM05D001620 ORTHO05D005461 1.9e-08 62.8 89 39.3
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.6e-07 59.7 86 36.0
Sc19g0002780 Simmondsia chinensis HOM05D001620 ORTHO05D005461 1.6e-07 59.7 89 37.1
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 2.1e-07 59.3 97 32.0
Dinv44168 Davidia involucrata HOM05D001620 ORTHO05D005461 3.6e-07 58.5 88 36.4
Thecc.04G171200 Theobroma cacao HOM05D001620 ORTHO05D005461 3.6e-07 58.5 87 36.8
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 8.0e-07 57.4 97 30.9
Potri.007G134300 Populus trichocarpa HOM05D001620 ORTHO05D005461 1.0e-06 57.0 91 36.3
ClCG07G015080 Citrullus lanatus HOM05D001620 ORTHO05D005461 1.4e-06 56.6 89 36.0
Hund03188 Selenicereus undatus HOM05D001620 ORTHO05D005461 1.4e-06 56.6 89 32.6
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 3.0e-06 55.5 94 31.9
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 4.0e-06 55.1 68 42.6


User provided reference genes

Program Settings