Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 3.1e-273 944.5 463 100.0
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.0e-152 541.6 461 59.9
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.6e-151 537.7 470 60.0
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 3.3e-150 535.8 469 58.4
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 2.1e-149 533.1 466 58.2
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.8e-148 530.0 466 59.4
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.1e-148 529.3 462 58.0
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 1.5e-147 526.9 469 58.0
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 9.9e-147 524.2 462 59.3
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 3.2e-145 519.2 460 59.1
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 4.1e-145 518.8 465 57.2
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 7.1e-145 518.1 469 58.8
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.2e-144 517.3 493 55.6
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 2.7e-144 516.2 464 57.8
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 6.6e-143 511.5 463 58.1
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.6e-141 506.9 463 57.7
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.8e-140 503.4 463 57.0
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 3.1e-140 502.7 463 54.9
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 4.0e-140 502.3 456 56.8
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 6.8e-140 501.5 463 56.8
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.2e-139 500.7 465 56.3
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.5e-139 500.4 463 57.2
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 2.2e-138 496.5 466 56.7
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.8e-138 495.7 463 53.8
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 4.2e-137 492.3 468 54.9
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.4e-137 491.9 464 55.0
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 9.3e-137 491.1 463 56.8
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.2e-136 490.7 461 56.0
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.6e-136 490.3 464 57.5
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.1e-136 490.0 461 56.0
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 2.7e-136 489.6 462 55.0
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 6.0e-136 488.4 464 55.8
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 7.8e-136 488.0 461 54.4
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.3e-135 487.3 438 58.0
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.7e-135 486.9 465 54.4
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.7e-135 486.9 465 55.5
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 3.0e-135 486.1 463 54.6
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 3.9e-135 485.7 465 54.2
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 3.9e-135 485.7 465 54.0
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 6.6e-135 485.0 438 55.7
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.5e-134 483.8 469 54.2
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 3.3e-134 482.6 453 54.1
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 4.3e-134 482.3 464 53.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.3e-133 480.7 463 53.8
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.1e-133 479.9 464 55.6
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.1e-133 479.9 463 54.6
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 2.8e-133 479.6 465 55.7
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 3.6e-133 479.2 464 53.4
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 6.2e-133 478.4 464 53.2
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 8.1e-133 478.0 462 53.7
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.4e-132 477.2 466 53.9
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.8e-132 476.9 459 54.0
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.8e-132 476.9 463 54.2
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.4e-132 476.5 461 53.1
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 2.4e-132 476.5 466 54.1
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 3.1e-132 476.1 463 55.3
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.0e-132 475.7 466 53.9
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 4.0e-132 475.7 468 52.6
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.5e-131 473.8 466 53.9
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.5e-131 473.8 466 53.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.5e-131 473.8 464 53.4
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.0e-131 473.4 461 53.4
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 3.4e-131 472.6 468 51.7
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 3.4e-131 472.6 462 53.5
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.4e-131 472.6 463 53.3
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 5.8e-131 471.9 463 52.5
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.6e-131 471.5 461 52.9
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 9.9e-131 471.1 461 53.6
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 2.2e-130 469.9 461 53.6
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.8e-130 469.2 463 52.9
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 8.4e-130 468.0 466 53.4
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.1e-129 467.6 463 52.5
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.4e-129 466.5 462 53.0
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 5.4e-129 465.3 462 52.2
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.7e-128 463.0 464 52.2
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.0e-127 461.1 467 51.0
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.3e-127 460.7 437 54.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 8.7e-127 458.0 464 52.2
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.5e-126 456.4 465 51.4
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 2.1e-125 453.4 468 49.6
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 2.1e-125 453.4 464 53.0
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 4.8e-125 452.2 496 47.8
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 3.1e-124 449.5 566 44.2
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 9.0e-124 448.0 436 53.7
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 2.0e-123 446.8 464 51.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.5e-123 445.7 463 49.2
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 3.8e-122 442.6 463 48.8
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 4.9e-122 442.2 463 50.1
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.9e-121 440.3 477 50.7
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.4e-121 439.9 463 48.2
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 1.6e-120 437.2 524 45.2
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 3.5e-120 436.0 467 49.9
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.3e-119 434.1 435 52.0
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 1.3e-119 434.1 459 49.2
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 6.7e-119 431.8 467 47.8
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 8.7e-119 431.4 464 48.9
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 4.3e-118 429.1 466 48.3
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.8e-117 426.4 464 48.1
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 6.2e-117 425.2 497 46.1
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 3.1e-116 422.9 463 47.5
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 6.9e-116 421.8 464 47.0
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 4.5e-115 419.1 463 47.7
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 7.6e-115 418.3 463 47.3
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 7.6e-115 418.3 466 46.4
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 7.6e-115 418.3 414 52.2
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.4e-113 414.1 452 50.0
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 9.3e-113 411.4 463 45.8
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 9.3e-113 411.4 463 45.8
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 5.5e-105 385.6 244 74.2
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.7e-101 372.9 384 53.4
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.7e-101 372.9 384 53.4
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 6.3e-101 372.1 454 45.4
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 6.3e-101 372.1 460 45.9
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.4e-99 366.3 462 47.8
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 5.5e-97 359.0 270 65.9
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 1.8e-95 354.0 457 43.5
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.0e-94 350.5 426 46.5
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.2e-88 331.3 462 43.3
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.0e-84 315.5 267 57.3
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.1e-80 303.9 170 80.6
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.6e-72 277.7 158 77.8
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.8e-71 272.3 141 85.1
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 3.4e-70 270.0 547 34.9
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 4.1e-68 263.1 461 38.4
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.4e-62 243.4 144 77.8
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 2.0e-54 217.6 121 76.9
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.8e-43 179.1 91 84.6
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 5.1e-34 149.8 172 45.9
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.2e-30 138.7 81 75.3
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.1e-28 129.4 236 35.6
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.2e-27 128.6 66 87.9
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.8e-27 125.9 73 79.5
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.8e-27 125.9 73 79.5
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 3.8e-21 107.1 66 77.3
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 3.8e-21 107.1 59 78.0
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 6.6e-18 96.3 132 39.4
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 9.0e-15 85.9 90 52.2
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.8e-13 80.5 74 54.1
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 6.4e-13 79.7 532 26.5
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.3e-10 72.0 70 45.7


User provided reference genes

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