Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.3e-296 1022.3 514 100.0
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 3.0e-213 745.3 438 82.0
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.1e-212 743.4 501 73.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 3.3e-212 741.9 441 81.6
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.4e-210 735.7 452 79.6
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 4.1e-210 734.9 477 75.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 5.3e-210 734.6 436 81.2
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 9.1e-210 733.8 497 73.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 4.5e-209 731.5 437 81.5
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.3e-208 729.9 436 80.7
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 2.2e-208 729.2 443 79.5
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.9e-208 728.8 431 82.1
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 6.5e-208 727.6 494 73.7
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.1e-207 726.9 438 79.2
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 4.2e-207 724.9 437 78.5
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 5.5e-207 724.5 457 77.9
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 9.4e-207 723.8 438 79.2
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.6e-206 721.8 454 78.2
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 4.7e-206 721.5 434 80.9
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 6.1e-206 721.1 437 78.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 8.0e-206 720.7 439 79.7
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.8e-205 717.2 437 79.6
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 2.0e-204 716.1 517 69.8
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.0e-204 716.1 433 80.4
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 2.6e-204 715.7 450 78.0
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 5.7e-204 714.5 431 78.9
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 5.7e-204 714.5 495 72.1
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.3e-203 713.4 442 78.1
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.3e-203 713.4 499 71.1
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.7e-203 713.0 434 79.3
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.8e-203 712.2 433 80.1
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 2.8e-203 712.2 451 77.4
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.8e-203 711.4 528 68.9
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 8.3e-203 710.7 438 77.6
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 8.3e-203 710.7 438 77.4
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.1e-202 710.3 438 76.9
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.4e-202 709.9 436 78.7
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 3.1e-202 708.8 502 70.9
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.1e-202 708.8 438 78.3
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.3e-202 708.0 535 68.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.2e-201 706.8 498 73.1
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.2e-201 706.8 438 77.4
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.7e-201 705.7 460 75.4
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.9e-201 704.5 438 78.1
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 5.9e-201 704.5 532 67.9
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 7.7e-201 704.1 437 77.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 7.7e-201 704.1 439 78.8
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.0e-200 703.7 435 78.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.7e-200 703.0 435 77.0
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.7e-200 703.0 437 76.9
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.9e-200 702.2 437 78.5
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 3.8e-200 701.8 432 78.9
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 3.8e-200 701.8 439 76.8
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.0e-200 701.4 424 80.7
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 5.0e-200 701.4 530 68.1
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 6.5e-200 701.0 438 76.9
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 6.5e-200 701.0 445 76.4
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.5e-200 700.7 446 75.3
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.5e-200 700.7 432 79.2
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 8.5e-200 700.7 477 72.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.9e-199 699.5 440 78.0
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 3.2e-199 698.7 438 76.9
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.2e-198 696.8 431 76.8
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.6e-198 696.4 422 79.4
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.6e-198 696.4 446 74.9
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 2.7e-198 695.7 443 76.7
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 4.7e-198 694.9 434 76.7
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 8.0e-198 694.1 451 76.5
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.0e-197 693.7 424 79.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.4e-197 693.3 438 77.6
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 3.0e-197 692.2 437 76.4
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.0e-197 692.2 514 68.3
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.2e-197 691.4 455 75.4
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 6.8e-197 691.0 432 78.2
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 8.8e-197 690.6 454 74.4
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.2e-196 690.3 436 75.9
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.5e-196 689.9 424 79.2
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.6e-196 689.1 435 75.6
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.4e-196 688.7 437 76.4
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 5.7e-196 688.0 481 71.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 7.5e-196 687.6 425 78.8
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 7.5e-196 687.6 425 78.8
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 9.8e-196 687.2 461 72.5
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 9.8e-196 687.2 422 78.2
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 9.8e-196 687.2 422 79.4
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.3e-195 686.8 438 75.6
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.7e-195 686.4 452 74.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.7e-195 685.3 435 76.6
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 4.8e-195 684.9 444 75.2
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 4.8e-195 684.9 442 75.3
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.8e-195 684.9 424 79.2
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.8e-194 682.9 437 76.0
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.4e-194 682.6 424 77.8
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 3.1e-194 682.2 489 70.8
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 5.4e-194 681.4 446 74.0
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 9.1e-194 680.6 502 67.7
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.2e-193 680.2 434 74.2
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.6e-193 679.9 436 76.4
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.7e-193 679.1 428 78.0
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 5.9e-193 677.9 424 78.1
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.9e-192 675.6 424 76.9
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.8e-192 675.2 424 77.4
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.8e-192 675.2 424 77.4
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.6e-192 674.1 424 76.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 3.3e-191 672.2 424 76.2
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 4.2e-191 671.8 438 74.4
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.6e-190 669.8 424 76.7
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.0e-189 667.2 447 75.2
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.4e-189 666.8 425 75.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.5e-185 652.1 448 71.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 8.6e-184 647.5 432 71.1
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.1e-182 642.9 405 77.8
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.8e-182 642.5 436 72.0
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.0e-180 636.3 431 71.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.8e-180 634.8 398 78.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.2e-179 632.9 491 64.0
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 2.7e-177 625.9 477 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 2.5e-175 619.4 484 63.2
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 5.8e-164 581.6 365 77.5
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.5e-148 530.4 324 79.3
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-145 520.4 303 81.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.1e-145 520.0 429 60.6
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.4e-138 497.3 311 77.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-138 497.3 302 78.5
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.1e-137 493.4 433 56.6
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.3e-133 478.8 324 71.0
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 9.0e-133 478.0 429 57.3
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 4.9e-131 472.2 317 72.2
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.2e-130 469.2 299 77.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.7e-121 439.9 275 78.2
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.5e-119 433.3 299 71.9
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 4.3e-119 432.6 427 54.8
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.9e-115 419.9 260 77.3
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.4e-103 379.4 425 44.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.6e-92 343.6 432 43.8
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.5e-91 339.0 241 71.8
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.3e-75 288.1 355 44.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.8e-72 275.8 173 75.1
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.5e-50 204.9 133 73.7
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.2e-49 199.5 177 59.3
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 9.9e-47 192.2 125 76.8
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.2e-44 185.3 184 49.5
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.5e-42 177.6 117 73.5
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 2.8e-41 174.1 120 67.5
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.6e-39 166.0 132 62.9
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 3.4e-31 140.6 89 71.9
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.1e-28 131.3 90 68.9
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 7.9e-28 129.4 136 52.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.0e-27 129.0 81 74.1
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 5.1e-27 126.7 81 74.1
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.9e-26 124.8 80 71.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 5.6e-26 123.2 80 71.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 2.1e-25 121.3 80 70.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-24 119.0 77 70.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.7e-22 111.7 78 65.4
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 7.1e-21 106.3 259 29.7
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 4.6e-20 103.6 67 71.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 4.6e-20 103.6 67 71.6
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.0e-19 102.4 67 70.1
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 5.1e-19 100.1 82 64.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.7e-14 85.1 53 75.5


User provided reference genes

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