Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 9.4e-59 229.9 113 100.0
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.4e-38 162.2 99 80.8
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 4.7e-10 68.2 50 64.0
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 2.6e-08 62.4 65 50.8
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.6e-08 62.4 48 64.6
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.6e-08 62.4 48 64.6
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.6e-08 62.4 48 64.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.6e-08 62.4 81 40.7
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.4e-08 62.0 34 82.4
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.4e-08 62.0 34 82.4
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 3.4e-08 62.0 48 64.6
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 5.8e-08 61.2 56 55.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 5.8e-08 61.2 43 67.4
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 7.5e-08 60.8 39 69.2
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 7.5e-08 60.8 39 69.2
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 7.5e-08 60.8 33 81.8
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 9.9e-08 60.5 33 78.8
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 9.9e-08 60.5 41 70.7
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 9.9e-08 60.5 33 81.8
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.3e-07 60.1 33 81.8
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.3e-07 60.1 33 81.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.2e-07 59.3 83 42.2
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.2e-07 59.3 33 78.8
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.2e-07 59.3 32 84.4
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.2e-07 59.3 32 84.4
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 2.2e-07 59.3 33 78.8
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.2e-07 59.3 32 84.4
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 2.2e-07 59.3 32 84.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 2.2e-07 59.3 33 78.8
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.2e-07 59.3 45 60.0
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.2e-07 59.3 85 42.4
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.2e-07 59.3 32 84.4
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.9e-07 58.9 33 78.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.9e-07 58.9 49 59.2
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 2.9e-07 58.9 49 63.3
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 2.9e-07 58.9 49 63.3
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.9e-07 58.9 33 75.8
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 3.7e-07 58.5 36 75.0
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 4.9e-07 58.2 104 35.6
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 4.9e-07 58.2 50 58.0
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 4.9e-07 58.2 33 78.8
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.9e-07 58.2 33 78.8
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.9e-07 58.2 33 78.8
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 4.9e-07 58.2 35 74.3
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.9e-07 58.2 32 81.2
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.9e-07 58.2 32 81.2
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 4.9e-07 58.2 33 75.8
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 4.9e-07 58.2 33 78.8
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 4.9e-07 58.2 33 78.8
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 6.4e-07 57.8 33 75.8
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 6.4e-07 57.8 33 78.8
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 6.4e-07 57.8 48 62.5
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 6.4e-07 57.8 33 72.7
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 6.4e-07 57.8 42 64.3
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 6.4e-07 57.8 49 61.2
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 8.3e-07 57.4 32 81.2
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 8.3e-07 57.4 33 78.8
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.1e-06 57.0 35 74.3
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.1e-06 57.0 31 83.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.1e-06 57.0 31 83.9
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.1e-06 57.0 31 83.9
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.1e-06 57.0 56 51.8
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.1e-06 57.0 31 83.9
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-06 57.0 33 75.8
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-06 57.0 33 75.8
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 1.1e-06 57.0 35 71.4
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-06 57.0 33 75.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-06 57.0 33 75.8
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.1e-06 57.0 46 60.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.1e-06 57.0 32 81.2
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.1e-06 57.0 32 81.2
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.4e-06 56.6 38 71.1
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.4e-06 56.6 33 75.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.4e-06 56.6 33 75.8
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.4e-06 56.6 32 78.1
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.4e-06 56.6 33 78.8
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.4e-06 56.6 33 75.8
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.9e-06 56.2 44 61.4
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.9e-06 56.2 36 75.0
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.9e-06 56.2 33 75.8
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.9e-06 56.2 32 78.1
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.9e-06 56.2 33 72.7
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.9e-06 56.2 30 86.7
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.4e-06 55.8 32 81.2
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 2.4e-06 55.8 45 62.2
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.4e-06 55.8 53 56.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.4e-06 55.8 75 41.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 3.2e-06 55.5 32 78.1
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 3.2e-06 55.5 32 78.1
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 3.2e-06 55.5 45 62.2
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.2e-06 55.5 31 80.6
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.2e-06 55.5 32 81.2
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 4.1e-06 55.1 32 78.1
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 4.1e-06 55.1 45 60.0
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.1e-06 55.1 32 78.1
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 4.1e-06 55.1 32 78.1
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.1e-06 55.1 71 43.7
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 4.1e-06 55.1 32 78.1
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.4e-06 54.7 32 78.1
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.4e-06 54.7 32 78.1
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 5.4e-06 54.7 71 43.7
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 5.4e-06 54.7 32 75.0
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 7.1e-06 54.3 32 75.0


User provided reference genes

Program Settings