Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 2.2e-129 465.7 249 100.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 8.3e-84 314.3 252 70.2
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.8e-82 307.8 240 70.4
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.2e-76 289.7 251 67.3
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 4.9e-76 288.5 235 68.9
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 2.4e-75 286.2 241 66.0
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.0e-73 280.8 234 68.4
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 5.1e-73 278.5 243 66.7
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.1e-72 277.3 232 67.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.5e-72 276.9 233 68.2
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 4.3e-72 275.4 237 64.6
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 5.6e-72 275.0 242 65.3
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.3e-72 274.6 246 65.0
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 9.6e-72 274.2 240 65.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.6e-72 274.2 246 64.6
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.2e-71 273.9 240 65.4
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.2e-71 273.9 246 65.0
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.6e-71 273.5 243 63.8
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.6e-71 273.5 242 64.0
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.6e-71 273.5 242 64.0
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.8e-71 272.7 243 63.8
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 4.7e-71 271.9 240 65.0
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 4.7e-71 271.9 231 68.4
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.2e-71 271.6 246 64.2
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 8.1e-71 271.2 242 64.5
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.4e-70 270.4 246 63.0
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.4e-70 270.4 235 67.7
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 9.0e-70 267.7 246 62.6
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.5e-69 266.9 218 67.0
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.0e-69 266.5 226 66.8
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.0e-69 266.5 232 63.8
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 2.6e-69 266.2 244 63.5
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 2.6e-69 266.2 226 65.9
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 3.4e-69 265.8 231 65.8
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 3.4e-69 265.8 243 63.4
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 4.4e-69 265.4 248 62.5
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 4.4e-69 265.4 224 64.3
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.7e-68 263.5 246 63.8
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 2.9e-68 262.7 236 64.0
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.9e-68 262.7 241 63.5
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 2.9e-68 262.7 233 63.1
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 3.8e-68 262.3 245 60.8
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 6.4e-68 261.5 224 66.5
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 8.4e-68 261.2 244 63.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.9e-67 260.0 246 61.4
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.9e-67 260.0 244 64.3
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.2e-67 259.2 234 65.0
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.2e-67 259.2 234 65.0
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 7.1e-67 258.1 241 62.2
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.1e-67 258.1 247 61.5
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.3e-67 257.7 232 64.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 1.2e-66 257.3 243 62.1
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.6e-66 256.9 247 61.1
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.1e-66 256.5 227 63.4
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.1e-66 256.5 244 60.7
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 2.7e-66 256.1 232 63.4
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.7e-65 253.4 226 64.2
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 5.1e-65 251.9 244 60.2
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 5.6e-64 248.4 235 60.9
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 7.3e-64 248.1 238 59.7
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 1.3e-63 247.3 239 56.9
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.6e-63 246.9 226 61.9
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.1e-63 246.5 231 62.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 8.1e-63 244.6 239 60.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.8e-62 243.4 240 58.8
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.4e-62 243.0 246 58.9
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 3.1e-62 242.7 231 61.0
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.1e-62 242.7 246 58.9
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 6.9e-62 241.5 231 59.7
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 3.4e-61 239.2 247 59.1
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 3.4e-61 239.2 231 59.3
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.4e-61 239.2 237 58.2
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 4.5e-61 238.8 231 59.7
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 5.8e-61 238.4 250 60.0
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 7.6e-61 238.0 248 59.3
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 7.6e-61 238.0 232 59.9
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 7.6e-61 238.0 232 63.8
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.1e-59 234.2 246 55.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 7.1e-59 231.5 240 56.2
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 9.3e-59 231.1 247 54.7
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 9.3e-59 231.1 241 58.1
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.3e-59 231.1 176 72.7
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 9.3e-59 231.1 218 61.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.6e-58 230.3 238 55.9
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.6e-58 230.3 229 58.5
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 2.7e-58 229.6 218 59.6
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 7.9e-58 228.0 242 55.8
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 7.9e-58 228.0 239 56.9
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.0e-57 227.6 246 54.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.3e-57 227.3 244 54.5
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 2.3e-57 226.5 241 56.0
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 2.3e-57 226.5 245 55.1
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 2.3e-57 226.5 245 55.1
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 5.1e-57 225.3 242 56.2
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 6.7e-57 224.9 237 56.1
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 8.7e-57 224.6 241 53.5
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 8.7e-57 224.6 241 53.5
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 5.6e-56 221.9 239 54.4
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 5.6e-56 221.9 246 52.4
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 5.6e-56 221.9 247 53.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 2.1e-55 219.9 247 52.6
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 3.1e-54 216.1 246 51.6
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.4e-52 208.4 233 51.5
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 3.5e-50 202.6 247 50.6
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.1e-48 197.6 198 61.1
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 9.0e-46 188.0 241 48.5
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.0e-44 184.5 210 54.8
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 3.8e-44 182.6 244 48.0
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 6.5e-44 181.8 237 48.9
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.1e-43 181.0 242 46.3
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.1e-43 181.0 121 81.0
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.4e-43 180.6 244 47.5
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.4e-43 180.6 244 47.5
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 4.5e-37 159.1 164 58.5
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.0e-33 146.4 116 64.7
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 6.3e-31 138.7 128 58.6
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.1e-27 127.9 212 39.6
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.6e-26 124.0 132 56.1
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 7.9e-26 121.7 242 38.4
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.9e-26 121.7 75 84.0
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 4.4e-24 115.9 179 41.3
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 7.7e-21 105.1 79 75.9
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 1.9e-19 100.5 148 45.3
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.7e-18 95.9 125 48.8
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 6.1e-18 95.5 85 60.0
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-12 77.4 119 41.2
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.1e-11 74.7 78 57.7
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 9.4e-11 71.6 94 44.7
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 3.0e-09 66.6 62 59.7
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 6.3e-07 58.9 72 52.8


User provided reference genes

Program Settings