Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.7e-182 642.9 410 100.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.0e-163 580.5 417 92.8
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 9.5e-85 318.2 371 56.1
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 6.2e-84 315.5 370 57.6
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.7e-81 307.4 379 53.6
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 3.5e-79 299.7 359 54.9
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.0e-78 298.1 371 55.3
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.7e-78 297.4 370 55.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 3.9e-78 296.2 370 55.1
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 5.1e-78 295.8 370 55.4
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 9.5e-77 291.6 370 57.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 3.6e-76 289.7 399 53.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.7e-76 289.3 367 54.8
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 8.1e-76 288.5 414 49.5
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 8.1e-76 288.5 415 49.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 8.1e-76 288.5 417 49.4
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.1e-75 286.6 366 54.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.0e-75 286.2 414 49.5
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.0e-75 286.2 394 51.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.2e-74 284.6 369 53.9
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.0e-74 283.9 428 50.0
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 3.4e-74 283.1 371 55.0
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 4.4e-74 282.7 375 52.3
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 7.6e-74 282.0 387 51.4
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 7.6e-74 282.0 361 53.2
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 9.9e-74 281.6 362 52.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.7e-73 280.8 356 52.8
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.2e-73 280.4 355 56.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.2e-73 280.4 361 53.5
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.9e-73 280.0 418 48.1
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.9e-73 280.0 356 52.8
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.9e-73 280.0 374 51.9
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 3.7e-73 279.6 355 50.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.9e-73 279.3 367 55.6
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.4e-72 277.7 378 52.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.9e-72 277.3 434 47.0
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 3.2e-72 276.6 390 50.8
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.1e-72 276.2 366 53.3
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.2e-72 275.0 352 55.7
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.2e-71 274.6 363 53.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.6e-71 274.2 386 50.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.1e-71 273.9 359 52.1
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.1e-71 273.9 374 52.1
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.1e-71 273.9 356 54.2
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 3.5e-71 273.1 381 52.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 6.0e-71 272.3 388 50.3
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 6.0e-71 272.3 393 49.6
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 7.8e-71 271.9 348 52.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 7.8e-71 271.9 361 52.1
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.0e-70 271.6 395 52.4
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.0e-70 271.6 361 52.1
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.0e-70 271.6 357 50.4
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.3e-70 271.2 350 51.7
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.7e-70 270.8 388 50.3
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.7e-70 270.8 382 50.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.7e-70 270.8 371 50.4
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.3e-70 270.4 377 50.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.9e-70 269.6 368 52.4
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 5.1e-70 269.2 395 52.2
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 6.6e-70 268.9 395 52.2
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 6.6e-70 268.9 380 51.1
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 8.6e-70 268.5 395 51.9
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 8.6e-70 268.5 359 51.8
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 8.6e-70 268.5 359 51.8
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 8.6e-70 268.5 377 51.5
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.1e-69 268.1 357 51.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.1e-69 268.1 371 51.2
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-69 267.7 377 51.5
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.9e-69 267.3 368 50.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.9e-69 267.3 414 47.8
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.5e-69 266.9 378 49.7
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 4.3e-69 266.2 369 50.7
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 5.6e-69 265.8 350 51.4
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 7.3e-69 265.4 352 51.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 7.3e-69 265.4 359 50.1
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 7.3e-69 265.4 367 50.1
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 9.6e-69 265.0 382 50.0
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 9.6e-69 265.0 367 54.5
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 9.6e-69 265.0 371 51.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.1e-68 263.8 377 51.2
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.1e-68 263.8 383 49.3
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.8e-68 263.5 359 51.3
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.7e-68 262.7 379 48.8
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-67 261.5 339 52.2
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-67 260.8 364 50.8
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.8e-67 260.8 369 48.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.1e-67 260.0 350 51.1
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 5.2e-67 259.2 379 48.8
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 5.2e-67 259.2 395 48.1
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 6.8e-67 258.8 289 55.0
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 8.9e-67 258.5 352 50.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 8.9e-67 258.5 375 49.9
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 8.9e-67 258.5 379 48.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.5e-66 257.7 364 50.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.6e-66 256.9 420 47.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.6e-66 256.9 276 52.5
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-66 256.5 370 49.7
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 5.8e-66 255.8 339 49.6
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 7.6e-66 255.4 373 51.2
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 9.9e-66 255.0 369 49.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-65 253.8 369 49.6
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 2.9e-65 253.4 362 49.7
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 3.8e-65 253.1 382 49.2
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 4.9e-65 252.7 368 47.3
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 8.4e-65 251.9 363 48.8
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.1e-64 251.5 281 52.7
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.4e-64 249.2 369 49.3
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 5.4e-64 249.2 372 44.6
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 7.1e-64 248.8 347 49.9
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.2e-63 248.1 334 57.2
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.1e-63 247.3 368 50.0
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.7e-63 246.9 258 55.8
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 6.0e-63 245.7 364 48.9
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 6.0e-63 245.7 354 50.6
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-62 245.0 361 49.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.0e-62 243.4 371 47.2
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.9e-62 243.0 380 50.5
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-61 241.1 361 48.8
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 5.6e-61 239.2 370 44.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-60 238.0 356 48.9
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 2.4e-59 233.8 378 43.9
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 4.0e-59 233.0 383 46.2
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 4.4e-58 229.6 364 45.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.8e-57 226.5 277 49.5
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 4.9e-57 226.1 351 43.9
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 4.9e-57 226.1 434 40.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 6.4e-57 225.7 282 49.3
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 4.2e-56 223.0 336 50.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.8e-52 209.5 296 51.7
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.3e-45 186.8 367 42.2
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 4.3e-45 186.4 373 42.6
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.3e-44 184.9 343 45.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.1e-43 180.3 251 52.6
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.2e-39 168.3 205 52.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.5e-37 160.6 376 40.2
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 3.1e-35 153.7 344 38.1
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-33 148.7 356 38.2
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.3e-30 138.3 199 45.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.8e-30 137.9 246 41.5
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.7e-30 135.6 161 49.1
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.1e-29 135.2 214 44.4
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 8.2e-28 129.0 271 42.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 8.2e-28 129.0 271 42.8
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 7.2e-24 115.9 185 44.3
ATR0584G245 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.1e-23 114.4 105 88.6
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 7.4e-21 105.9 109 56.0
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.1e-19 100.5 242 36.8
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 8.5e-17 92.4 255 31.8
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.6e-15 88.2 101 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 6.1e-15 86.3 214 31.3
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.3e-14 84.3 338 33.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 5.1e-14 83.2 166 36.7
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 7.7e-10 69.3 159 43.4


User provided reference genes

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