Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 1.5e-220 769.2 384 100.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 5.1e-141 505.0 296 83.8
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 2.8e-139 499.2 305 81.3
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.2e-137 493.8 299 81.3
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 3.4e-137 492.3 295 81.7
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 3.4e-137 492.3 298 80.9
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 7.7e-137 491.1 297 81.1
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.7e-136 490.0 298 80.9
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.7e-136 490.0 298 80.5
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.9e-136 489.2 297 80.1
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.8e-136 488.8 298 80.2
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 5.0e-136 488.4 298 82.2
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 5.0e-136 488.4 298 79.2
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 8.5e-136 487.6 305 79.3
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.9e-135 486.5 297 80.1
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 2.5e-135 486.1 298 79.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.2e-135 485.7 297 79.8
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.2e-135 485.7 298 81.2
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 5.5e-135 485.0 298 80.9
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.5e-135 485.0 298 80.2
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.2e-134 483.8 297 79.8
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.2e-134 483.8 300 78.3
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 4.7e-134 481.9 297 79.5
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 4.7e-134 481.9 297 79.1
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 6.1e-134 481.5 296 79.1
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 6.1e-134 481.5 296 79.4
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 6.1e-134 481.5 298 79.2
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 7.9e-134 481.1 296 80.7
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 7.9e-134 481.1 296 79.1
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.4e-133 480.3 296 80.1
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.8e-133 479.9 280 82.1
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 3.0e-133 479.2 298 78.9
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 5.1e-133 478.4 298 79.5
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 8.8e-133 477.6 298 79.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.1e-132 477.2 296 78.4
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.1e-132 477.2 296 78.7
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.5e-132 476.9 298 77.5
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 2.6e-132 476.1 298 79.5
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.3e-132 475.7 298 79.9
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 5.7e-132 474.9 341 71.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 7.4e-132 474.6 298 79.2
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 7.4e-132 474.6 296 80.1
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 1.7e-131 473.4 300 77.7
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 2.2e-131 473.0 303 77.9
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.4e-130 470.3 298 76.8
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.4e-130 470.3 303 76.6
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.8e-130 469.9 301 76.1
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 5.3e-130 468.4 299 75.6
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 5.3e-130 468.4 299 76.9
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.2e-129 467.2 299 77.3
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.2e-129 467.2 295 78.3
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.0e-129 466.5 285 78.6
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.6e-129 466.1 299 76.9
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 4.5e-129 465.3 298 77.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 4.5e-129 465.3 322 73.6
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.8e-128 462.2 300 76.0
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 1.9e-127 459.9 304 74.7
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.5e-127 459.5 299 75.3
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 2.5e-127 459.5 296 77.4
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 3.2e-127 459.1 298 76.2
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 9.4e-127 457.6 299 75.3
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 9.4e-127 457.6 296 76.0
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.2e-126 457.2 298 77.5
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-126 456.8 299 75.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 2.1e-126 456.4 301 74.4
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 3.6e-126 455.7 304 74.3
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 3.6e-126 455.7 304 74.3
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 3.6e-126 455.7 304 74.3
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 4.7e-126 455.3 299 74.9
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 4.7e-126 455.3 298 74.5
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 4.7e-126 455.3 298 74.5
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 4.7e-126 455.3 298 74.5
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 4.7e-126 455.3 297 76.1
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 6.1e-126 454.9 298 74.5
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 6.1e-126 454.9 298 74.5
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 6.1e-126 454.9 296 75.3
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 8.0e-126 454.5 301 74.1
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 8.0e-126 454.5 296 75.0
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.4e-125 453.8 304 73.7
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.8e-125 453.4 304 73.7
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.3e-125 453.0 296 75.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 2.3e-125 453.0 297 75.8
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 8.8e-125 451.1 298 74.2
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.1e-124 450.7 300 76.3
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.1e-124 450.7 297 75.1
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 3.7e-123 445.7 304 72.4
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 8.2e-123 444.5 279 77.4
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.0e-121 439.9 304 73.4
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.0e-121 439.9 300 73.3
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.0e-121 439.9 303 72.3
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.7e-121 439.5 280 75.7
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 7.7e-121 438.0 303 72.3
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.0e-120 437.6 294 73.8
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.7e-120 436.8 304 72.7
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-119 434.1 314 69.7
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.5e-119 433.7 307 72.0
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 2.5e-119 433.0 245 84.5
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 4.2e-119 432.2 299 73.2
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.2e-118 430.6 292 71.9
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 3.6e-118 429.1 301 70.1
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.6e-118 429.1 301 70.1
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.4e-117 427.2 303 68.6
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.8e-117 424.9 306 69.0
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.8e-117 424.5 306 68.6
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.5e-116 423.7 306 68.6
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.6e-116 422.9 250 81.6
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.1e-110 403.3 297 69.4
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.3e-107 394.0 300 63.0
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.9e-107 392.1 297 68.7
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.1e-106 391.0 303 68.3
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 2.0e-105 386.7 277 65.7
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 2.7e-105 386.3 245 78.4
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.9e-104 382.9 277 65.0
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 6.6e-104 381.7 302 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 4.0e-101 372.5 300 58.7
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.0e-100 370.2 273 61.9
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.0e-97 360.1 226 77.4
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 2.7e-97 359.8 280 66.4
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.9e-96 355.9 280 66.4
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 8.6e-96 354.8 226 76.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.6e-94 349.4 212 79.7
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 8.9e-93 344.7 270 67.8
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 9.8e-92 341.3 218 75.7
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 3.0e-88 329.7 246 63.0
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.4e-76 289.7 301 47.5
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.7e-75 287.3 307 48.5
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.2e-74 283.1 225 64.4
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 8.1e-70 268.5 149 87.2
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 8.7e-64 248.4 305 48.2
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.3e-63 246.5 158 77.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.1e-55 221.5 226 47.8
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.1e-45 186.8 147 64.6
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.2e-44 184.9 112 79.5
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.8e-40 171.0 318 34.6
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 6.7e-40 169.1 390 32.1
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.9e-36 156.0 202 46.5
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.2e-34 149.1 94 74.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.1e-33 147.5 94 73.4
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.1e-33 147.5 94 73.4
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.5e-31 140.6 82 81.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 3.3e-31 140.2 97 75.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 9.7e-31 138.7 95 75.8
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.8e-29 134.4 94 67.0
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-20 104.8 80 70.0
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.6e-17 93.6 53 83.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.4e-15 86.7 92 54.3
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.8e-13 81.3 47 80.9
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.8e-13 81.3 47 80.9
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 2.6e-12 77.4 44 81.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-11 75.5 51 70.6
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 6.1e-09 66.2 63 58.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.5e-07 59.3 85 40.0


User provided reference genes

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