Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.8e-252 874.8 431 100.0
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.9e-86 322.0 433 46.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 8.5e-84 315.1 435 43.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.9e-83 313.9 298 54.4
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 9.4e-83 311.6 383 46.2
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 6.1e-82 308.9 461 42.1
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.1e-81 305.8 381 47.2
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.2e-79 300.4 447 42.1
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.7e-79 299.7 297 53.9
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 6.3e-79 298.9 429 43.1
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-78 297.7 390 43.1
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.8e-78 297.4 449 41.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.4e-78 297.0 440 40.9
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 3.1e-78 296.6 391 42.2
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 3.1e-78 296.6 305 50.5
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 9.1e-78 295.0 434 41.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.5e-77 294.3 435 41.6
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.5e-77 294.3 299 51.8
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.5e-77 294.3 428 42.5
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 4.5e-77 292.7 436 41.1
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 4.5e-77 292.7 305 49.8
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 5.9e-77 292.4 429 42.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.0e-76 291.6 422 42.2
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.3e-76 291.2 294 51.0
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.3e-76 291.2 430 42.3
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.3e-76 291.2 296 51.4
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.7e-76 290.8 431 41.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.7e-76 290.8 390 43.8
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.2e-76 290.4 376 44.7
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.2e-76 290.4 396 44.2
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.1e-75 288.1 370 47.0
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.4e-75 287.7 429 42.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 4.2e-75 286.2 414 41.1
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 9.4e-75 285.0 323 46.7
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.2e-74 284.6 452 41.4
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.1e-74 283.9 382 44.0
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 2.7e-74 283.5 294 50.0
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 3.6e-74 283.1 433 40.9
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 3.6e-74 283.1 433 40.9
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 7.9e-74 282.0 423 40.0
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 7.9e-74 282.0 438 40.9
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.0e-73 281.6 290 49.7
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.0e-73 281.6 426 40.1
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.8e-73 280.8 418 41.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.8e-73 280.8 423 39.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.8e-73 280.8 428 40.2
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.0e-73 280.0 384 42.4
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 3.0e-73 280.0 296 49.7
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 5.1e-73 279.3 365 45.5
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 5.1e-73 279.3 341 45.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 8.8e-73 278.5 314 46.8
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-72 278.1 446 41.3
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.5e-72 277.7 438 39.7
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.5e-72 277.7 438 39.7
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.5e-72 277.7 321 46.4
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.5e-72 277.7 294 49.3
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.6e-72 276.9 443 41.5
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 3.3e-72 276.6 444 41.2
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.4e-72 276.2 430 39.3
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 7.4e-72 275.4 418 40.4
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 9.7e-72 275.0 428 40.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 9.7e-72 275.0 437 39.8
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.7e-72 275.0 290 49.7
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.3e-71 274.6 349 44.4
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.7e-71 274.2 385 41.6
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.7e-71 274.2 320 46.9
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.2e-71 273.9 428 39.5
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 3.7e-71 273.1 373 43.4
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 4.8e-71 272.7 358 43.6
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.3e-71 272.3 385 41.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-71 272.3 301 50.5
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.3e-71 272.3 492 36.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 8.2e-71 271.9 383 41.3
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.2e-71 271.9 302 49.7
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 8.2e-71 271.9 306 46.7
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-70 271.6 443 40.6
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.8e-70 270.8 434 41.7
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.4e-70 270.4 443 37.5
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.4e-70 270.4 289 48.1
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 4.1e-70 269.6 420 40.0
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 7.0e-70 268.9 433 40.0
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.0e-69 267.3 466 39.1
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 2.6e-69 266.9 279 50.9
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.3e-68 264.6 416 40.1
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.7e-68 264.2 298 46.3
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.8e-68 263.1 292 48.3
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 3.8e-68 263.1 321 45.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.0e-68 262.7 394 39.8
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 8.5e-68 261.9 412 38.8
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 8.5e-68 261.9 295 46.4
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.1e-67 261.5 438 39.3
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.5e-67 261.2 420 39.0
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 7.2e-67 258.8 417 40.5
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 7.2e-67 258.8 420 39.0
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 7.2e-67 258.8 415 38.8
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 9.4e-67 258.5 425 39.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.1e-66 257.3 301 48.5
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.1e-66 257.3 289 46.7
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 6.7e-65 252.3 335 42.4
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.5e-64 251.1 500 36.0
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 7.4e-64 248.8 356 40.4
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.2e-63 247.3 321 42.7
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 6.3e-63 245.7 269 46.5
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.1e-62 245.0 431 39.4
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.8e-62 244.2 275 45.5
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.6e-61 241.1 280 46.4
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-61 240.7 280 46.1
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.9e-61 239.2 283 45.6
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.3e-60 238.0 282 44.3
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.7e-60 237.7 283 45.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.7e-60 237.7 283 45.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.3e-57 227.3 303 44.2
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.8e-57 225.7 282 44.0
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.2e-56 224.9 433 36.3
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.5e-51 207.2 285 40.0
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.2e-50 204.9 243 45.3
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.6e-50 204.5 279 40.1
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 8.3e-47 192.2 279 37.6
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.7e-44 184.5 289 39.8
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.9e-44 183.7 308 39.3
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-43 181.8 282 41.8
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 8.9e-41 172.2 240 42.9
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 4.6e-37 159.8 285 36.5
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.3e-36 157.5 139 55.4
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.9e-36 157.1 190 45.8
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 7.3e-35 152.5 171 46.8
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 2.8e-34 150.6 131 53.4
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.4e-33 148.3 305 32.8
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.4e-32 143.3 188 46.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 5.8e-32 142.9 230 41.3
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.3e-31 141.7 247 38.1
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.4e-30 136.3 120 55.8
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 9.2e-30 135.6 247 36.4
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.6e-28 129.4 97 59.8
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.8e-26 124.0 181 40.3
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-25 122.1 77 70.1
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-25 121.7 74 68.9
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.2e-23 114.4 181 38.1
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.2e-23 114.4 113 52.2
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.1e-19 102.1 278 28.8
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 2.5e-19 100.9 68 66.2
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 4.7e-18 96.7 179 38.0
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 6.2e-18 96.3 58 67.2
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 3.1e-17 94.0 175 35.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 3.2e-14 84.0 103 43.7
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.1e-12 76.6 63 58.7
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 8.6e-12 75.9 153 33.3
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-11 75.5 107 42.1
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.6e-11 72.4 80 47.5
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.2e-10 72.0 229 29.3
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-10 72.0 57 61.4
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-10 72.0 67 53.7
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.4e-08 63.5 41 61.0
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-07 62.0 168 32.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 4.9e-07 60.1 100 37.0


User provided reference genes

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