Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 1.8e-72 275.8 139 100.0
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 3.2e-40 168.7 140 61.4
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 2.2e-33 146.0 138 55.8
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 3.7e-33 145.2 141 53.9
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 2.4e-32 142.5 141 53.2
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.2e-31 140.2 111 63.1
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.1e-31 139.4 136 58.8
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 2.1e-31 139.4 143 55.9
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 2.7e-31 139.0 143 55.2
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 4.6e-31 138.3 121 62.0
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 6.0e-31 137.9 137 54.0
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 1.0e-30 137.1 135 56.3
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 1.7e-30 136.3 143 54.5
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 3.0e-30 135.6 137 57.7
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 3.0e-30 135.6 136 52.2
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-29 133.7 94 67.0
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.1e-29 133.7 141 53.9
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.5e-29 133.3 136 54.4
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.5e-29 133.3 139 52.5
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 1.5e-29 133.3 130 53.1
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.9e-29 132.9 112 59.8
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.9e-29 132.9 88 72.7
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 2.5e-29 132.5 139 53.2
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.5e-29 132.5 135 57.8
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.3e-29 132.1 138 58.0
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.3e-29 132.1 136 57.4
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 4.3e-29 131.7 130 56.2
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 4.3e-29 131.7 143 51.7
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.2e-28 130.2 144 54.9
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 1.6e-28 129.8 90 70.0
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.1e-28 129.4 141 53.9
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 2.1e-28 129.4 140 54.3
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 2.8e-28 129.0 136 53.7
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 2.8e-28 129.0 140 52.9
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 2.8e-28 129.0 94 69.1
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 3.6e-28 128.6 144 50.7
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 4.7e-28 128.3 134 50.0
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 1.1e-27 127.1 141 51.1
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 1.1e-27 127.1 143 53.8
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 1.8e-27 126.3 139 50.4
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 2.3e-27 125.9 143 51.0
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 3.1e-27 125.6 143 51.0
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 3.1e-27 125.6 144 52.8
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 4.0e-27 125.2 137 54.7
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 5.2e-27 124.8 137 54.7
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 6.8e-27 124.4 142 51.4
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 8.9e-27 124.0 163 47.2
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.2e-26 123.6 128 52.3
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.5e-26 123.2 142 50.0
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.5e-26 123.2 136 50.7
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.0e-26 122.9 97 60.8
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 2.6e-26 122.5 140 52.9
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.6e-26 122.5 144 49.3
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 5.8e-26 121.3 141 48.2
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 5.8e-26 121.3 144 48.6
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 5.8e-26 121.3 132 50.8
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 5.8e-26 121.3 132 50.8
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 2.2e-25 119.4 146 47.9
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.2e-25 119.4 138 51.4
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.9e-25 119.0 107 57.9
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 2.9e-25 119.0 99 61.6
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 3.7e-25 118.6 95 61.1
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 4.9e-25 118.2 99 56.6
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 6.4e-25 117.9 130 50.0
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 6.4e-25 117.9 90 67.8
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 8.4e-25 117.5 146 50.7
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 8.4e-25 117.5 130 50.8
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-24 117.1 77 70.1
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.1e-24 117.1 137 49.6
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.1e-24 117.1 132 49.2
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 2.4e-24 115.9 128 48.4
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 3.2e-24 115.5 137 49.6
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 5.4e-24 114.8 140 50.7
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 9.2e-24 114.0 127 52.0
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.7e-23 112.5 139 48.2
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 2.7e-23 112.5 94 58.5
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 3.5e-23 112.1 139 46.0
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 3.5e-23 112.1 95 61.1
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 3.5e-23 112.1 84 65.5
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 4.6e-23 111.7 82 67.1
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 1.0e-22 110.5 80 67.5
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.7e-22 109.8 78 66.7
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 2.3e-22 109.4 141 46.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 3.0e-22 109.0 128 50.8
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 3.9e-22 108.6 128 50.8
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 6.6e-22 107.8 108 55.6
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 6.6e-22 107.8 108 55.6
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 6.6e-22 107.8 92 55.4
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 6.6e-22 107.8 119 50.4
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 8.6e-22 107.5 140 48.6
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 8.6e-22 107.5 140 48.6
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.1e-21 107.1 95 55.8
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.1e-21 107.1 141 48.2
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 4.3e-21 105.1 123 51.2
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.3e-21 105.1 90 58.9
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 4.3e-21 105.1 106 51.9
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 5.6e-21 104.8 128 50.0
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 7.3e-21 104.4 123 51.2
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 1.2e-20 103.6 136 47.8
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 1.2e-20 103.6 134 47.8
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 1.6e-20 103.2 135 45.9
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 4.7e-20 101.7 92 57.6
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 4.7e-20 101.7 140 47.9
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 8.1e-20 100.9 93 53.8
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 4.0e-19 98.6 92 57.6
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 4.0e-19 98.6 90 58.9
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 6.8e-19 97.8 77 63.6
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 2.0e-18 96.3 132 45.5
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 4.4e-18 95.1 92 55.4
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 3.8e-17 92.0 114 48.2
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 1.4e-16 90.1 79 51.9
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.2e-15 87.0 129 40.3
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 2.1e-15 86.3 93 48.4
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 3.5e-15 85.5 117 40.2
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 5.1e-14 81.6 68 57.4
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 1.5e-13 80.1 85 48.2
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.9e-13 79.7 118 44.9
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 1.3e-12 77.0 70 54.3
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.3e-12 77.0 81 50.6
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 2.8e-12 75.9 118 42.4
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 4.8e-12 75.1 115 42.6
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 6.2e-12 74.7 70 54.3
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 8.1e-12 74.3 98 43.9
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 7.6e-10 67.8 117 39.3
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 9.9e-10 67.4 110 41.8
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 1.2e-07 60.5 71 47.9
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 1.3e-06 57.0 84 41.7


User provided reference genes

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