Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 3.5e-149 531.6 262 100.0
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 7.4e-91 337.8 197 86.3
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 9.7e-91 337.4 197 84.8
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 2.2e-90 336.3 193 86.5
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 4.8e-90 335.1 197 85.8
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 1.1e-89 334.0 193 85.0
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 1.8e-89 333.2 193 83.9
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 3.1e-89 332.4 197 83.8
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 4.1e-89 332.0 197 83.2
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 4.1e-89 332.0 197 83.8
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 5.3e-89 331.6 194 84.5
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 6.9e-89 331.3 214 79.0
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 6.9e-89 331.3 193 83.9
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 6.9e-89 331.3 197 82.7
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 6.9e-89 331.3 197 84.3
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 9.1e-89 330.9 193 83.4
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 9.1e-89 330.9 193 85.5
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.2e-88 330.5 197 82.7
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 1.2e-88 330.5 197 83.2
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 1.5e-88 330.1 193 83.9
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 2.6e-88 329.3 197 82.7
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 3.4e-88 328.9 197 81.7
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 4.5e-88 328.6 193 82.9
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 4.5e-88 328.6 193 85.5
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 4.5e-88 328.6 197 82.7
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 5.9e-88 328.2 193 81.9
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 5.9e-88 328.2 193 82.4
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 1.3e-87 327.0 193 83.4
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 1.7e-87 326.6 193 83.4
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 1.7e-87 326.6 193 83.4
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 3.8e-87 325.5 197 82.2
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 1.1e-86 323.9 193 81.3
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 1.1e-86 323.9 197 81.2
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 1.1e-86 323.9 197 81.7
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 1.4e-86 323.6 197 82.2
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 1.4e-86 323.6 197 81.7
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 1.9e-86 323.2 197 82.2
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 1.9e-86 323.2 197 82.2
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 1.9e-86 323.2 193 83.4
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 3.2e-86 322.4 193 81.3
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 3.2e-86 322.4 197 81.2
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 5.5e-86 321.6 197 80.7
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 7.2e-86 321.2 196 82.1
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 9.4e-86 320.9 193 80.8
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 1.2e-85 320.5 197 80.7
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 1.6e-85 320.1 193 82.9
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 2.1e-85 319.7 193 82.9
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 4.7e-85 318.5 197 80.7
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 4.7e-85 318.5 197 82.2
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 4.7e-85 318.5 200 79.5
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 6.1e-85 318.2 193 79.8
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 6.1e-85 318.2 194 82.0
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 7.9e-85 317.8 199 80.9
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 7.9e-85 317.8 194 82.0
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 2.3e-84 316.2 197 79.7
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 3.0e-84 315.8 198 78.8
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 3.0e-84 315.8 191 80.6
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 3.9e-84 315.5 197 79.7
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 3.9e-84 315.5 197 79.7
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 5.1e-84 315.1 195 79.0
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 6.7e-84 314.7 197 77.7
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 6.7e-84 314.7 193 79.3
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 2.0e-83 313.2 197 79.2
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 3.3e-83 312.4 194 78.9
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 5.7e-83 311.6 197 77.7
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 7.4e-83 311.2 197 77.7
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 9.7e-83 310.8 198 77.8
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 1.3e-82 310.5 197 78.7
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 2.2e-82 309.7 197 77.2
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 2.8e-82 309.3 199 77.4
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 4.8e-82 308.5 197 78.2
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 8.2e-82 307.8 257 65.8
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 1.8e-81 306.6 190 77.4
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 4.1e-81 305.4 190 76.8
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 3.5e-80 302.4 193 74.1
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 5.9e-80 301.6 186 78.5
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 2.9e-79 299.3 197 73.1
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 1.1e-78 297.4 213 68.1
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 3.2e-78 295.8 197 71.6
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 9.4e-78 294.3 213 67.6
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 3.6e-77 292.4 197 71.1
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 3.6e-77 292.4 197 77.2
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 6.1e-77 291.6 197 70.1
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 6.7e-76 288.1 197 69.0
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 8.8e-76 287.7 197 69.5
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 1.1e-75 287.3 197 69.0
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 1.5e-75 287.0 168 83.9
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 2.0e-75 286.6 217 62.7
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 2.6e-75 286.2 197 68.5
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 9.7e-75 284.3 197 68.5
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 1.7e-74 283.5 197 74.6
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 2.6e-72 276.2 169 81.1
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 3.4e-67 259.2 193 69.4
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 9.7e-67 257.7 211 58.8
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 1.2e-64 250.8 193 63.7
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 2.9e-63 246.1 172 73.8
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 2.7e-61 239.6 190 60.5
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 3.4e-59 232.6 141 83.0
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 1.4e-57 227.3 191 56.5
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 1.8e-52 210.3 197 59.9
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 2.8e-50 203.0 190 52.1
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 4.1e-49 199.1 161 62.1
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 3.5e-48 196.1 114 81.6
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 4.5e-48 195.7 114 80.7
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 5.9e-48 195.3 110 82.7
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 5.6e-46 188.7 114 78.1
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 2.3e-44 183.3 111 82.0
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 1.1e-41 174.5 114 75.4
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 9.2e-41 171.4 202 43.6
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 8.6e-39 164.9 105 72.4
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 2.5e-30 136.7 97 71.1
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 4.0e-28 129.4 93 74.2
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 4.0e-28 129.4 83 80.7
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 1.3e-26 124.4 263 33.8
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 3.7e-26 122.9 83 79.5
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 1.4e-25 120.9 80 66.2
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 1.4e-25 120.9 104 56.7
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 3.2e-25 119.8 78 66.7
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 1.1e-22 111.3 198 36.9
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 6.4e-18 95.5 63 65.1
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 2.7e-16 90.1 73 63.0
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 2.9e-10 70.1 41 75.6
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 4.2e-09 66.2 193 28.5
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 1.2e-08 64.7 191 28.3
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 1.2e-08 64.7 191 27.7
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 6.0e-08 62.4 193 26.4
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 6.0e-08 62.4 190 26.8
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 6.0e-08 62.4 159 34.0
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 6.0e-08 62.4 191 28.3
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 7.8e-08 62.0 188 27.7
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.0e-07 61.6 190 26.3
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 1.3e-07 61.2 193 27.5
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 1.3e-07 61.2 191 26.2
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 1.3e-07 61.2 185 27.0
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 1.3e-07 61.2 193 25.4
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 1.7e-07 60.8 193 27.5
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.7e-07 60.8 191 26.2
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 1.7e-07 60.8 191 27.7
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 1.7e-07 60.8 190 26.3
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 1.7e-07 60.8 191 27.2
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 2.3e-07 60.5 203 27.1
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 2.3e-07 60.5 196 31.1
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 2.3e-07 60.5 186 27.4
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 2.3e-07 60.5 186 27.4
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 2.3e-07 60.5 225 28.0
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 3.0e-07 60.1 187 27.8
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 3.0e-07 60.1 231 25.1
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 3.0e-07 60.1 191 30.4
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 3.9e-07 59.7 188 26.1
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 3.9e-07 59.7 186 26.9
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 6.6e-07 58.9 190 26.8
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 8.7e-07 58.5 192 27.6
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 8.7e-07 58.5 257 23.0
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.5e-06 57.8 185 28.6
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 1.5e-06 57.8 193 26.9
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 1.9e-06 57.4 193 26.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 1.9e-06 57.4 189 26.5
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 2.5e-06 57.0 185 29.7
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 2.5e-06 57.0 188 27.7
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 2.5e-06 57.0 192 26.0
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 3.3e-06 56.6 184 28.8
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 3.3e-06 56.6 187 27.8
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 4.3e-06 56.2 188 29.3
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 9.6e-06 55.1 217 24.0


User provided reference genes

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