Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 0.0e+00 1128.2 895 100.0
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 4.3e-114 416.8 769 57.1
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 4.3e-106 390.2 749 36.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.0e-103 381.3 732 36.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.6e-103 380.9 732 35.7
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 7.6e-103 379.4 736 36.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.3e-102 378.6 733 36.6
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 6.4e-102 376.3 868 37.2
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.9e-101 374.8 738 35.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 2.4e-101 374.4 734 35.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 3.2e-101 374.0 734 36.6
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.7e-100 370.9 746 35.4
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.7e-100 370.9 734 35.3
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 3.9e-99 367.1 730 35.1
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.5e-98 364.4 729 35.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 5.6e-98 363.2 749 35.4
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 7.3e-98 362.8 763 34.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 7.3e-98 362.8 736 37.0
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 9.6e-98 362.5 732 40.3
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.6e-97 361.7 719 36.7
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 3.6e-97 360.5 742 34.8
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 8.1e-97 359.4 729 35.9
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 2.4e-96 357.8 742 34.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.4e-95 354.0 742 35.3
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 7.6e-95 352.8 758 35.0
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 7.6e-95 352.8 740 36.5
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.3e-94 352.1 733 36.8
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.3e-94 352.1 730 36.0
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.9e-94 350.9 744 37.5
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 8.4e-94 349.4 744 34.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.4e-93 348.6 732 38.8
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.9e-93 348.2 742 36.8
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 5.5e-93 346.7 744 35.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.0e-91 342.4 731 35.2
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.3e-91 341.3 737 40.8
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 2.3e-91 341.3 759 34.8
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 3.9e-91 340.5 763 33.6
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 5.1e-91 340.1 733 34.9
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 4.3e-90 337.0 731 42.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 4.3e-90 337.0 747 48.5
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 7.4e-90 336.3 779 42.0
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.3e-89 335.5 736 41.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 6.2e-89 333.2 715 36.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 8.1e-89 332.8 864 30.2
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-88 332.0 730 53.8
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-88 332.0 743 52.9
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.0e-88 330.5 729 35.0
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 6.9e-88 329.7 751 42.3
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.2e-87 328.9 725 33.7
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.6e-87 327.8 738 33.7
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.6e-87 327.8 738 33.7
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.0e-86 325.9 759 31.9
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 6.5e-86 323.2 726 34.6
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.1e-85 322.4 704 49.1
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.5e-85 321.2 750 38.3
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.2e-85 320.9 746 34.3
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.2e-85 320.9 744 34.0
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 7.1e-85 319.7 735 32.9
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 7.1e-85 319.7 726 33.1
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 9.3e-85 319.3 740 36.5
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 2.1e-84 318.2 737 51.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.8e-83 315.1 740 33.9
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.3e-83 314.7 732 33.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 8.7e-83 312.8 750 31.3
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-82 312.4 724 33.0
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.5e-82 312.0 741 31.2
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 3.3e-82 310.8 741 33.3
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.7e-82 310.1 737 53.3
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 9.6e-82 309.3 746 33.0
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.8e-81 307.8 744 32.7
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 8.2e-81 306.2 733 33.4
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.4e-80 305.4 823 30.7
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 4.1e-80 303.9 735 33.1
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 5.3e-80 303.5 790 31.6
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.9e-80 303.1 744 32.5
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 9.0e-80 302.8 750 31.9
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 9.0e-80 302.8 740 32.6
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.2e-79 302.4 742 32.3
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 3.4e-79 300.8 742 33.0
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.6e-79 299.7 741 30.8
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.3e-78 298.9 721 32.9
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 5.5e-77 293.5 776 32.1
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.5e-77 293.5 709 33.3
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 9.3e-77 292.7 735 32.8
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.2e-76 292.4 650 36.6
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.2e-76 292.4 742 32.3
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 4.6e-76 290.4 737 32.4
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 6.1e-76 290.0 755 32.1
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.1e-74 285.8 738 32.4
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.9e-74 285.0 712 33.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 2.8e-73 281.2 728 37.6
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 3.7e-73 280.8 729 31.6
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 3.4e-71 274.2 646 33.6
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.7e-70 271.9 706 30.9
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 3.9e-67 260.8 716 31.3
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 6.7e-67 260.0 742 31.0
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.5e-63 248.8 178 67.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.6e-63 248.1 224 59.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.2e-62 245.0 192 63.5
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 8.5e-62 243.0 720 38.1
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 4.2e-61 240.7 636 30.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.2e-60 239.2 234 56.4
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 4.7e-60 237.3 637 31.2
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 2.0e-58 231.9 675 29.8
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.8e-56 225.3 208 56.7
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.1e-56 224.6 197 58.9
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 6.5e-54 216.9 200 58.0
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-52 212.6 270 47.8
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 2.1e-52 211.8 200 55.5
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.6e-52 211.1 270 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 4.7e-52 210.7 274 47.8
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.8e-51 208.8 715 31.9
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-49 201.4 191 56.0
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-49 201.4 199 56.8
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.3e-43 181.8 146 63.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 4.2e-37 161.0 192 43.8
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 6.1e-36 157.1 228 42.5
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 4.0e-35 154.5 152 55.3
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.5e-29 135.2 231 39.8
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 6.1e-28 130.6 197 37.6
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-23 115.9 174 40.8
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 5.9e-23 114.0 147 45.6
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 3.9e-22 111.3 141 43.3
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 8.6e-22 110.2 100 56.0
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.5e-21 109.4 80 68.8
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 3.1e-19 101.7 185 38.4
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 3.1e-19 101.7 185 38.4
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.9e-13 82.4 59 64.4
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 2.5e-13 82.0 75 52.0
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 4.3e-13 81.3 127 37.0
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 8.9e-11 73.6 134 37.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.0e-10 72.4 129 37.2
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 2.6e-10 72.0 49 65.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.2e-09 68.9 48 68.8
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.9e-09 68.6 129 35.7
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.9e-09 67.8 185 31.4
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.4e-08 66.2 90 33.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 2.4e-08 65.5 108 38.0
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.2e-07 63.2 102 38.2
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.1e-07 62.4 123 31.7
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.7e-07 62.0 123 31.7
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 7.8e-07 60.5 142 28.2
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 7.8e-07 60.5 76 46.1
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.0e-06 60.1 123 30.1
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.3e-06 59.7 180 27.2
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.7e-06 59.3 172 27.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.7e-06 59.3 116 32.8
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.3e-06 58.9 111 38.7
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.3e-06 58.9 111 38.7
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 5.1e-06 57.8 118 33.1
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 5.1e-06 57.8 93 41.9
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 6.6e-06 57.4 118 34.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 8.6e-06 57.0 123 30.9


User provided reference genes

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