Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 5.7e-176 620.9 341 100.0
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.6e-106 389.0 281 69.4
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.8e-106 388.7 283 68.9
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.2e-104 384.0 288 67.7
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.3e-103 380.6 292 67.5
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.9e-103 379.4 294 64.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 2.9e-103 379.4 289 66.8
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 6.4e-103 378.3 292 64.7
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 8.4e-103 377.9 288 66.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.1e-102 377.5 288 67.7
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.1e-102 377.5 289 66.1
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.1e-102 377.5 289 66.4
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 1.1e-102 377.5 282 67.4
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.9e-102 376.7 292 64.4
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.4e-102 376.3 285 66.0
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 3.2e-102 375.9 288 66.0
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.2e-102 375.6 289 66.1
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 9.3e-102 374.4 289 66.1
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.2e-101 374.0 292 66.8
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.2e-101 374.0 288 65.6
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.6e-101 373.6 280 67.1
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.6e-101 373.6 288 64.6
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.7e-101 372.9 286 65.4
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.5e-101 372.5 284 66.2
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 6.0e-101 371.7 291 64.3
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.8e-100 370.2 286 65.0
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.8e-100 370.2 288 65.6
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.3e-100 369.8 263 71.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 3.9e-100 369.0 298 63.4
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 3.9e-100 369.0 298 63.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 3.9e-100 369.0 285 65.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.1e-99 367.5 293 66.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.1e-99 367.5 279 64.9
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.1e-99 367.5 290 64.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 4.3e-99 365.5 289 63.3
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 5.6e-99 365.2 288 65.6
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 5.6e-99 365.2 279 65.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 9.6e-99 364.4 305 62.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.3e-98 364.0 290 63.8
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.6e-98 363.6 282 65.2
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 2.1e-98 363.2 294 63.3
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.8e-98 362.8 285 62.8
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.4e-97 360.5 284 65.5
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.4e-97 360.5 301 63.1
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.8e-97 360.1 266 68.8
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.8e-97 360.1 281 63.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.4e-97 359.8 273 65.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.0e-97 359.0 286 63.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 4.0e-97 359.0 294 63.9
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 5.3e-97 358.6 290 62.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 6.9e-97 358.2 269 67.7
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 9.0e-97 357.8 283 61.5
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.5e-96 357.1 294 60.9
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.0e-96 356.7 303 61.1
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.0e-96 356.7 277 65.0
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.6e-96 356.3 280 63.9
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.6e-96 356.3 293 62.5
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 3.4e-96 355.9 330 58.2
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 5.8e-96 355.1 291 61.5
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.0e-95 354.4 291 62.2
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.0e-95 354.4 277 65.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.7e-95 353.6 291 61.9
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.2e-95 353.2 287 63.4
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.8e-95 352.4 290 62.8
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 4.9e-95 352.1 284 62.0
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 4.9e-95 352.1 298 61.1
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.1e-94 350.9 285 61.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.1e-94 350.9 276 64.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.5e-94 349.7 341 56.3
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.2e-94 349.4 285 63.2
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.5e-94 348.6 277 63.9
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 7.1e-94 348.2 283 61.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 9.3e-94 347.8 290 60.3
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.2e-93 347.4 300 60.0
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.6e-93 347.1 281 61.9
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.7e-93 346.3 280 63.2
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.0e-93 345.1 264 65.2
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.3e-92 344.0 293 60.8
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 1.3e-92 344.0 257 65.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 3.9e-92 342.4 294 59.9
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.9e-92 342.4 285 61.8
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.5e-91 339.7 289 61.2
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.3e-91 339.3 273 63.4
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.3e-91 339.0 287 59.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 3.7e-90 335.9 290 60.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.4e-89 333.2 258 63.2
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 9.0e-89 331.3 274 60.6
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-88 330.9 258 62.4
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 4.5e-88 328.9 270 62.2
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.7e-87 327.0 276 60.9
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.7e-87 327.0 276 59.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.5e-86 323.2 265 59.6
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 4.2e-86 322.4 273 60.1
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 4.2e-86 322.4 250 65.2
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-84 317.4 283 57.2
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 6.7e-84 315.1 311 53.4
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 3.3e-83 312.8 261 60.9
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.3e-83 312.4 280 60.0
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.8e-82 309.7 244 62.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 3.7e-82 309.3 275 57.8
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 5.3e-81 305.4 263 58.9
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 6.9e-81 305.1 275 57.5
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.5e-80 303.9 264 59.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 2.6e-80 303.1 261 59.8
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.0e-79 301.2 245 61.2
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.5e-79 298.5 246 63.4
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 8.5e-79 298.1 244 62.7
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.4e-78 297.4 311 51.8
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.2e-78 295.8 254 60.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 4.6e-77 292.4 275 55.6
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.0e-76 291.2 261 59.8
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.0e-75 287.0 219 63.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.7e-74 283.9 240 60.0
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.2e-69 267.7 200 64.0
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 4.4e-67 259.2 249 55.8
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.3e-66 257.7 196 65.3
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.2e-66 256.9 292 51.4
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 8.5e-63 245.0 235 56.6
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.1e-62 244.6 202 62.9
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 2.1e-61 240.4 275 48.4
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 7.2e-54 215.3 219 51.1
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 4.5e-48 196.1 255 43.1
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.1e-46 191.4 288 41.3
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 3.6e-45 186.4 150 60.7
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 5.2e-44 182.6 264 39.8
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.4e-41 173.7 116 72.4
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 3.5e-40 169.9 120 70.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.3e-39 167.9 131 64.9
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.7e-39 167.5 140 60.0
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-35 152.9 147 58.5
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.0e-28 131.7 118 55.1
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.1e-25 121.7 83 68.7
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.4e-25 119.4 91 67.0
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 6.0e-24 115.9 88 61.4
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 8.6e-23 112.1 83 65.1
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 3.1e-20 103.6 228 32.0
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.2e-19 101.7 272 31.6
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 4.4e-19 99.8 311 26.4
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.2e-16 91.7 224 29.0
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.0e-15 87.0 67 65.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 6.6e-15 85.9 83 53.0
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.9e-14 84.3 61 62.3
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.6e-13 81.3 206 28.6
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 4.7e-13 79.7 299 26.1
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.8e-12 77.8 299 25.8
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 8.9e-12 75.5 68 54.4
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.2e-10 70.9 62 56.5
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.2e-10 70.9 81 49.4
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.9e-10 70.5 140 35.0
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 4.9e-10 69.7 51 58.8
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 5.4e-09 66.2 118 33.9
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 5.4e-09 66.2 118 33.9
Os02g0521500 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D037234 2.1e-08 64.3 149 30.9
Cre06.g253900 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146689 2.7e-08 63.9 118 33.1
Cre06.g254002 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D141262 2.7e-08 63.9 118 33.1
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 2.3e-07 60.8 52 55.8
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 3.3e-06 57.0 39 64.1
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 9.6e-06 55.5 226 24.8


User provided reference genes

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