Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.3e-79 299.7 149 100.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.6e-72 275.4 149 88.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 7.5e-72 273.9 149 88.6
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.8e-71 271.9 147 88.4
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.8e-71 271.9 147 88.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 6.3e-71 270.8 147 89.1
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 6.3e-71 270.8 147 89.8
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.1e-70 270.0 147 88.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.1e-70 270.0 147 88.4
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-70 270.0 147 88.4
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-70 270.0 147 88.4
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-70 270.0 147 88.4
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-70 270.0 147 88.4
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.4e-70 269.6 147 88.4
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.4e-70 269.6 147 87.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.4e-70 268.9 149 86.6
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.4e-70 268.9 147 89.1
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 2.4e-70 268.9 149 87.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 2.4e-70 268.9 147 87.1
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.4e-70 268.9 147 87.8
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.1e-70 268.5 147 87.1
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.1e-70 268.5 147 89.1
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.1e-70 268.5 147 89.1
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 4.1e-70 268.1 147 87.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 5.4e-70 267.7 147 86.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 5.4e-70 267.7 147 87.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 7.0e-70 267.3 147 87.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 7.0e-70 267.3 147 87.8
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 7.0e-70 267.3 147 87.1
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 9.1e-70 266.9 147 87.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.2e-69 266.5 147 86.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.0e-69 265.8 147 87.1
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 3.5e-69 265.0 147 87.1
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 3.5e-69 265.0 147 86.4
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 4.5e-69 264.6 147 87.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 4.5e-69 264.6 147 85.7
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.5e-69 264.6 147 86.4
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 4.5e-69 264.6 147 86.4
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.5e-69 264.6 147 86.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 5.9e-69 264.2 147 86.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 7.7e-69 263.8 147 86.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 7.7e-69 263.8 147 86.4
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.0e-68 263.5 147 87.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.7e-68 262.7 147 85.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.3e-68 262.3 149 84.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.9e-68 261.9 149 83.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.8e-68 261.5 147 85.7
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.8e-68 261.5 147 84.4
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 5.0e-68 261.2 147 84.4
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 5.0e-68 261.2 147 85.7
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.0e-68 261.2 147 87.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.5e-67 259.6 147 84.4
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.9e-67 259.2 147 83.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.5e-67 258.8 144 86.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.5e-67 258.8 147 85.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.2e-67 258.5 147 85.7
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.2e-67 258.5 164 78.7
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.2e-67 258.1 147 85.0
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 4.2e-67 258.1 147 85.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 4.2e-67 258.1 147 83.7
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.5e-67 257.7 147 84.4
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.5e-67 257.7 164 78.7
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 7.2e-67 257.3 147 84.4
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-67 257.3 164 78.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-67 257.3 164 78.7
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 7.2e-67 257.3 147 83.7
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 9.5e-67 256.9 142 86.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 9.5e-67 256.9 147 83.7
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 9.5e-67 256.9 147 84.4
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.2e-66 256.5 147 84.4
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.6e-66 256.1 160 78.8
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.1e-66 255.8 147 82.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.8e-66 255.4 147 82.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.8e-66 255.4 147 82.3
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 3.6e-66 255.0 146 82.9
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.7e-66 254.6 150 86.0
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.7e-66 254.6 147 83.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 8.0e-66 253.8 147 82.3
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.0e-65 253.4 146 82.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.8e-65 252.7 170 75.3
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.2e-64 250.0 147 81.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.2e-64 250.0 147 82.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.5e-64 249.6 147 81.6
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-64 249.6 147 84.4
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.6e-64 248.8 147 81.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.4e-64 248.4 147 83.0
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 4.4e-64 248.1 147 78.2
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.7e-64 247.7 147 81.0
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.7e-64 247.7 150 84.0
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 7.5e-64 247.3 147 81.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.3e-63 246.5 147 81.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.7e-63 246.1 147 80.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.7e-63 246.1 149 81.2
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.8e-63 245.4 147 81.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.7e-63 245.0 147 81.0
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 6.3e-63 244.2 175 70.3
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-62 243.4 147 80.3
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-62 243.0 147 79.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-62 243.0 147 80.3
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.4e-62 243.0 150 83.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.8e-62 242.7 147 76.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.1e-62 241.9 147 81.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 9.2e-62 240.4 147 76.9
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.7e-61 238.8 134 87.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.5e-61 238.4 147 78.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.5e-61 238.4 195 64.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.5e-61 238.4 147 76.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.3e-60 236.5 147 78.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 3.8e-60 235.0 149 75.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 8.6e-60 233.8 147 78.2
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.1e-59 233.4 203 60.6
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.5e-59 233.0 147 78.9
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.9e-59 232.6 147 77.6
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 9.5e-59 230.3 123 86.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 3.6e-58 228.4 149 75.2
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 8.0e-58 227.3 125 84.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.0e-57 226.9 136 80.9
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.0e-57 226.9 132 84.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 6.8e-57 224.2 147 74.1
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-56 223.4 158 73.4
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.9e-55 218.0 125 80.8
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 6.6e-52 207.6 138 78.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 8.6e-52 207.2 177 60.5
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.6e-50 201.8 143 73.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.6e-50 201.8 137 73.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 8.0e-50 200.7 147 71.4
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 8.0e-50 200.7 148 72.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.0e-49 198.4 151 69.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.2e-49 198.0 118 88.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 5.2e-49 198.0 133 74.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 3.7e-47 191.8 106 89.6
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 6.4e-47 191.0 105 87.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-46 188.7 113 82.3
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 7.0e-46 187.6 149 66.4
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.0e-45 186.0 103 88.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-45 185.7 103 88.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-45 185.3 103 87.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-45 185.3 103 87.4
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 7.8e-45 184.1 103 86.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-44 183.3 147 65.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.3e-44 183.3 115 77.4
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 5.0e-44 181.4 110 85.5
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 8.1e-42 174.1 103 85.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-39 166.4 90 88.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.9e-39 164.9 89 83.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.0e-32 142.9 103 68.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-31 140.2 82 85.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-30 136.7 76 92.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-26 123.2 82 74.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.7e-26 121.7 72 87.5
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.1e-25 120.6 80 72.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-25 119.4 102 63.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.8e-23 112.1 77 71.4
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.4e-23 110.9 80 67.5
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.4e-22 108.2 71 73.2
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.5e-19 99.4 72 63.9
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-18 96.7 63 74.6
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 3.6e-18 95.5 146 41.8
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-17 94.0 65 75.4
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 6.9e-17 91.3 118 43.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-14 82.4 48 87.5
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-14 82.4 48 87.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.5e-13 79.0 154 37.0
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-12 76.6 107 49.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.0e-12 75.9 46 69.6
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-08 63.2 36 72.2


User provided reference genes

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