Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 2.9e-287 991.1 478 100.0
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 8.4e-250 866.7 479 86.6
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.8e-248 860.1 481 84.8
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 8.7e-247 856.7 481 84.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.5e-246 855.9 479 85.8
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.3e-245 852.8 480 84.2
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.8e-244 849.0 487 83.0
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 3.1e-244 848.2 479 83.1
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 4.0e-244 847.8 474 85.4
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 9.0e-244 846.7 479 83.7
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.2e-243 846.3 473 84.4
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 5.8e-243 844.0 476 85.1
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 9.9e-243 843.2 477 83.0
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 9.9e-243 843.2 477 83.4
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.3e-242 842.8 477 83.2
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 2.9e-242 841.6 474 84.4
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.9e-242 841.6 473 84.1
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.9e-242 840.9 459 85.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 6.4e-242 840.5 481 83.2
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.1e-241 839.7 480 82.9
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.4e-241 838.6 480 82.3
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.4e-241 838.6 480 82.1
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.4e-241 838.6 479 82.9
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 3.2e-241 838.2 485 82.5
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.2e-241 838.2 481 83.6
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 3.2e-241 838.2 479 83.5
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 4.2e-241 837.8 480 83.8
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 5.4e-241 837.4 484 83.7
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.2e-240 836.3 481 82.7
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.2e-240 836.3 481 82.7
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-240 835.9 474 83.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 1.6e-240 835.9 476 81.7
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.1e-240 835.5 478 83.7
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.5e-240 834.7 480 83.3
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.0e-239 833.2 497 81.3
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.0e-239 833.2 480 81.2
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.7e-239 832.4 480 81.9
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 5.1e-239 830.9 479 82.5
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 6.6e-239 830.5 444 87.8
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.1e-238 829.7 479 82.7
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.5e-238 829.3 479 82.3
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.5e-238 829.3 479 81.6
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.5e-238 829.3 476 82.8
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 1.5e-238 829.3 474 82.7
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 4.3e-238 827.8 456 83.8
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.6e-238 827.4 486 80.5
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.3e-237 826.2 479 80.6
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-237 825.9 478 82.2
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.8e-237 825.1 480 80.8
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 4.8e-237 824.3 479 81.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 4.8e-237 824.3 479 80.6
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.4e-236 822.8 474 82.3
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 2.4e-236 822.0 480 82.3
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.4e-236 822.0 455 83.3
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 3.1e-236 821.6 479 80.4
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 5.3e-236 820.8 471 81.3
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 5.3e-236 820.8 479 80.4
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 6.9e-236 820.5 478 81.8
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 9.0e-236 820.1 479 82.0
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 9.0e-236 820.1 479 80.4
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 80.8
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 2.0e-235 818.9 479 81.8
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.0e-235 818.9 479 80.0
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.0e-235 818.9 479 81.2
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.6e-235 818.5 479 80.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 5.8e-235 817.4 480 80.6
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 5.8e-235 817.4 479 80.2
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 7.6e-235 817.0 479 80.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 9.9e-235 816.6 479 81.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-234 816.2 479 79.5
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.3e-234 816.2 479 80.8
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.7e-234 815.8 479 80.0
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.2e-234 815.5 479 80.0
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.8e-234 814.7 479 80.0
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 3.8e-234 814.7 479 81.0
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.9e-234 814.3 471 80.5
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 6.4e-234 813.9 474 80.4
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.1e-233 813.1 478 80.3
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-233 812.8 478 80.8
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.4e-233 812.8 469 80.0
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.2e-233 811.2 447 84.3
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 7.1e-233 810.4 480 79.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 7.1e-233 810.4 476 80.5
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.7e-232 808.5 487 78.6
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.3e-231 806.2 479 80.0
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.3e-231 806.2 438 85.2
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.3e-231 806.2 475 80.4
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 5.1e-231 804.3 457 82.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.1e-230 803.1 479 79.3
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.5e-230 802.7 471 80.7
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.3e-230 801.6 482 79.5
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.8e-229 798.5 438 84.0
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.8e-229 797.7 478 79.3
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 6.2e-229 797.3 487 77.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 8.1e-229 797.0 474 80.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.4e-228 795.4 478 78.9
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.2e-227 793.1 479 80.0
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.7e-224 781.9 494 77.1
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-222 776.5 503 75.3
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.5e-216 755.0 471 77.1
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.5e-214 749.6 458 78.2
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.8e-213 744.6 502 73.1
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.5e-211 739.6 507 73.6
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.5e-211 739.6 436 77.3
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-209 733.0 478 73.4
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 6.1e-208 727.6 478 73.2
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 6.1e-208 727.6 473 71.7
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 5.3e-204 714.5 475 72.2
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 9.1e-204 713.8 448 72.8
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.0e-203 712.6 502 71.9
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.0e-202 710.3 481 71.9
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.9e-193 679.5 384 82.6
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 4.1e-188 661.8 483 68.5
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 4.1e-188 661.8 463 69.8
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.7e-173 612.1 363 78.5
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.3e-170 602.8 363 78.0
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 5.0e-170 601.7 457 65.9
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 7.5e-166 587.8 473 63.6
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.3e-151 539.7 420 65.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.0e-150 536.6 304 80.6
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 4.7e-144 515.4 410 62.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 8.1e-144 514.6 304 78.6
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 8.4e-141 504.6 281 84.7
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 9.2e-140 501.1 275 85.5
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 4.3e-137 492.3 435 54.7
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.4e-127 460.7 308 71.8
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.4e-124 450.7 307 72.3
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 9.0e-111 404.8 249 77.1
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 9.0e-103 378.3 228 76.3
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 9.0e-103 378.3 228 76.3
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.9e-102 375.6 211 83.4
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.2e-93 347.1 417 46.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.4e-87 327.8 200 80.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.0e-85 321.6 464 43.1
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.0e-74 283.1 151 82.1
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.5e-73 281.2 428 41.6
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.2e-65 255.0 181 67.4
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 7.5e-65 252.3 181 66.9
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 5.9e-62 242.7 174 67.2
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 2.9e-61 240.4 174 66.7
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 9.8e-49 198.7 98 87.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 9.8e-49 198.7 98 87.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 3.9e-45 186.8 111 79.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.1e-36 158.7 105 69.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.5e-36 158.3 97 75.3
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.2e-35 155.2 95 81.1
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.7e-32 144.8 76 84.2
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 6.6e-29 132.9 76 80.3
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 6.6e-29 132.9 86 69.8
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 3.5e-22 110.5 135 41.5
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.5e-20 105.1 56 83.9
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.5e-20 104.4 65 70.8
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.2e-14 85.5 72 63.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.2e-14 85.5 72 63.9
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.6e-14 83.6 45 82.2
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 2.3e-13 81.3 48 81.2
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 8.7e-13 79.3 72 56.9
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 6.2e-11 73.2 76 51.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.4e-10 71.2 36 86.1
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 9.9e-09 65.9 37 81.1
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.4e-07 62.0 62 58.1
MBI04_g12481_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D243036 3.5e-06 57.4 31 87.1


User provided reference genes

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