Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 3.2e-253 877.9 423 100.0
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 2.4e-168 595.9 392 71.4
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.9e-165 586.3 403 68.0
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 7.3e-165 584.3 362 74.0
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 6.9e-163 577.8 407 67.1
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 9.0e-163 577.4 365 71.5
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 2.0e-162 576.2 367 71.1
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 2.6e-162 575.9 388 68.3
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 4.5e-162 575.1 386 68.9
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 5.8e-162 574.7 364 71.2
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 2.2e-161 572.8 373 72.4
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 3.8e-161 572.0 385 69.1
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.8e-161 572.0 365 71.5
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 3.8e-161 572.0 411 67.4
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.1e-160 570.5 364 70.1
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 1.9e-160 569.7 413 66.6
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 5.4e-160 568.2 400 66.5
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 5.4e-160 568.2 398 67.3
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 1.2e-159 567.0 366 71.3
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.2e-159 567.0 415 66.0
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 3.5e-159 565.5 385 67.3
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 3.5e-159 565.5 403 66.3
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 1.0e-158 563.9 364 69.8
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 1.3e-158 563.5 403 66.3
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.0e-158 562.4 365 70.4
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 6.7e-158 561.2 366 69.4
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 6.7e-158 561.2 365 71.0
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 8.7e-158 560.8 388 67.8
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.5e-157 559.3 366 70.2
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 4.3e-157 558.5 367 69.8
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 7.4e-157 557.8 364 69.5
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.3e-156 557.0 365 70.4
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 1.6e-156 556.6 364 69.2
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 6.2e-156 554.7 421 63.4
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 8.1e-156 554.3 441 61.2
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.8e-155 553.1 427 62.3
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 4.0e-155 552.0 389 65.3
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 4.0e-155 552.0 380 67.1
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 6.9e-155 551.2 381 66.1
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 9.0e-155 550.8 365 68.2
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.5e-154 550.1 388 66.2
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 3.4e-154 548.9 365 68.8
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 3.4e-154 548.9 382 65.7
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 3.4e-154 548.9 373 71.3
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 5.8e-154 548.1 415 64.3
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 7.6e-154 547.7 365 68.8
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 3.8e-153 545.4 437 60.9
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.1e-152 543.9 431 61.9
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 5.5e-152 541.6 385 66.0
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 2.1e-151 539.7 364 67.6
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.1e-151 539.7 366 67.2
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.0e-150 537.3 398 62.8
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.3e-150 536.2 366 67.2
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 5.1e-150 535.0 405 61.2
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 5.1e-150 535.0 385 64.9
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 5.1e-150 535.0 406 62.8
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 5.1e-150 535.0 396 63.4
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.9e-149 533.1 366 66.4
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 2.5e-149 532.7 374 65.8
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 7.4e-149 531.2 416 60.8
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 9.6e-149 530.8 384 65.6
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 8.2e-148 527.7 406 62.1
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.8e-147 526.6 402 62.2
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 2.4e-147 526.2 365 66.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.5e-146 523.5 393 59.8
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 1.3e-145 520.4 386 61.9
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 1.7e-145 520.0 365 65.8
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.7e-145 520.0 393 63.1
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 2.9e-145 519.2 391 63.7
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 3.8e-145 518.8 365 65.5
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 1.9e-144 516.5 372 66.1
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 2.5e-144 516.2 347 70.3
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 5.5e-144 515.0 372 62.9
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.6e-143 513.5 390 62.6
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 3.5e-143 512.3 426 58.9
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 7.9e-143 511.1 389 62.2
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 7.9e-143 511.1 389 62.2
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 4.3e-141 505.4 327 71.9
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.3e-140 503.8 390 62.3
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 2.8e-140 502.7 398 60.1
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 2.4e-139 499.6 388 61.9
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.4e-138 495.7 411 60.3
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 2.2e-137 493.0 391 60.9
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 4.2e-136 488.8 361 62.3
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 7.2e-136 488.0 390 58.7
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.6e-135 486.9 392 58.7
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 2.7e-135 486.1 388 60.8
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 1.4e-134 483.8 417 55.4
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 5.7e-133 478.4 382 60.7
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 3.7e-132 475.7 399 57.1
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 1.1e-131 474.2 331 65.9
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 5.5e-128 461.8 364 59.1
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 3.0e-126 456.1 323 65.3
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.3e-125 452.6 290 69.0
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 7.0e-123 444.9 387 53.7
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 9.1e-123 444.5 305 65.9
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 6.1e-119 431.8 378 53.2
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 8.0e-119 431.4 307 65.5
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.0e-115 418.3 366 50.5
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.9e-114 415.2 389 49.1
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 6.5e-113 411.8 295 66.1
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 4.7e-103 379.0 394 45.7
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 8.3e-100 368.2 281 64.8
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 1.0e-94 351.3 227 71.8
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 3.1e-91 339.7 260 61.9
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 5.9e-90 335.5 362 48.3
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.4e-78 297.7 409 42.8
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.2e-76 290.4 323 48.6
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 1.2e-66 258.1 242 54.5
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 8.4e-60 235.3 186 58.6
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 3.9e-57 226.5 467 31.7
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 4.6e-50 203.0 194 52.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 5.6e-48 196.1 235 42.1
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.6e-45 187.2 128 65.6
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 4.0e-30 136.7 102 55.9
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 6.9e-22 109.4 89 60.7
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 9.0e-22 109.0 62 80.6
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 3.4e-21 107.1 206 33.0
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.9e-19 101.3 61 77.0
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 4.2e-19 100.1 62 75.8
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 7.4e-16 89.4 72 58.3
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 5.0e-12 76.6 44 75.0
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 5.5e-11 73.2 51 60.8
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.5e-08 65.1 42 59.5
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.0e-08 64.7 44 75.0
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 1.7e-07 61.6 65 47.7


User provided reference genes

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