Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.5e-62 242.7 119 100.0
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 7.4e-30 134.0 84 78.6
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.3e-29 133.3 84 77.4
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.3e-29 133.3 84 77.4
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 6.2e-29 131.0 84 76.2
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 7.6e-27 124.0 84 72.6
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 5.0e-26 121.3 106 61.3
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.7e-23 110.9 67 76.1
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 1.9e-22 109.4 68 76.5
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 3.3e-22 108.6 76 71.1
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 4.3e-22 108.2 66 78.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.3e-21 106.7 69 75.4
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.3e-21 106.7 65 78.5
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.3e-21 106.7 65 78.5
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.6e-21 106.3 77 70.1
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.8e-21 105.5 66 77.3
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.8e-21 105.5 66 77.3
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.8e-21 104.8 66 75.8
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.8e-21 104.8 66 75.8
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 4.8e-21 104.8 66 75.8
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.8e-21 104.8 66 75.8
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 4.8e-21 104.8 65 75.4
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 4.8e-21 104.8 66 75.8
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 6.3e-21 104.4 66 77.3
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 6.3e-21 104.4 66 77.3
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 6.3e-21 104.4 66 77.3
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-21 104.4 66 77.3
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-21 104.4 66 77.3
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.2e-21 104.0 67 73.1
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.4e-20 102.4 71 73.2
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.4e-20 102.4 71 73.2
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 3.1e-20 102.1 63 77.8
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 3.1e-20 102.1 63 77.8
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 3.1e-20 102.1 83 66.3
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 5.3e-20 101.3 65 75.4
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 5.3e-20 101.3 65 75.4
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 5.3e-20 101.3 65 75.4
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 5.3e-20 101.3 65 75.4
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 5.3e-20 101.3 65 73.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 5.3e-20 101.3 65 73.8
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 6.9e-20 100.9 65 73.8
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 6.9e-20 100.9 65 73.8
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 6.9e-20 100.9 65 73.8
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 9.0e-20 100.5 68 73.5
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.2e-19 100.1 65 76.9
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 2.6e-19 99.0 66 71.2
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.6e-19 99.0 65 70.8
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 4.5e-19 98.2 65 70.8
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 4.5e-19 98.2 65 70.8
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 4.5e-19 98.2 65 70.8
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 5.9e-19 97.8 66 71.2
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 5.9e-19 97.8 66 74.2
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 5.9e-19 97.8 66 72.7
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.7e-19 97.4 67 71.6
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 7.7e-19 97.4 66 74.2
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 7.7e-19 97.4 66 74.2
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 7.7e-19 97.4 66 69.7
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 7.7e-19 97.4 64 75.0
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.0e-18 97.1 92 55.4
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-18 97.1 67 74.6
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.0e-18 97.1 66 74.2
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-18 96.7 67 68.7
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.9e-18 95.5 65 72.3
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 5.0e-18 94.7 60 76.7
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 6.5e-18 94.4 64 71.9
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.5e-17 92.4 59 74.6
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 9.4e-17 90.5 57 73.7
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.2e-16 90.1 66 66.7
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 4.6e-16 88.2 89 53.9
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.6e-16 88.2 53 79.2
ATR1100G035 Amborella trichopoda HOM05D002864 ORTHO05D063886 1.0e-15 87.0 49 89.8
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 2.3e-15 85.9 62 66.1
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.5e-14 83.2 64 67.2
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 9.7e-14 80.5 64 64.1
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 9.7e-14 80.5 64 64.1
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 9.7e-14 80.5 52 76.9
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 1.7e-13 79.7 50 76.0
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.8e-13 79.0 64 62.5
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.8e-13 79.0 64 62.5
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-13 77.4 81 54.3
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-11 73.6 47 74.5
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 5.9e-11 71.2 48 70.8
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 8.5e-10 67.4 69 53.6
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.2e-09 65.1 55 60.0
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.2e-09 65.1 55 60.0
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 2.3e-07 59.3 36 75.0
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 3.9e-07 58.5 34 73.5
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 5.1e-07 58.2 40 72.5
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 6.7e-07 57.8 42 64.3
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-06 57.0 54 55.6
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.5e-06 56.6 42 69.0


User provided reference genes

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