Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 0.0e+00 2206.4 1145 100.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.5e-236 823.9 969 54.2
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.3e-221 773.5 996 49.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.7e-214 750.0 1011 47.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 9.1e-194 681.8 999 46.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 4.2e-191 672.9 961 46.9
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.0e-189 666.4 925 47.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.7e-188 662.5 992 45.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 9.2e-186 655.2 939 46.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.0e-184 649.4 913 47.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.6e-184 648.7 949 48.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.2e-182 644.8 948 47.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.6e-177 627.9 900 47.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.9e-176 623.2 897 47.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.9e-175 620.9 898 44.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.5e-175 620.5 897 44.4
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 8.0e-174 615.5 1000 42.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-173 614.8 939 44.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.1e-173 613.6 962 44.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-172 610.9 939 44.2
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.9e-171 607.1 952 43.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.9e-170 604.4 930 44.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-169 600.5 954 43.8
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 4.6e-169 599.7 931 44.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 4.6e-169 599.7 917 45.3
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 7.8e-169 599.0 980 44.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.0e-168 598.6 862 44.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.3e-168 598.2 927 45.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.6e-168 595.5 953 43.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-167 595.1 932 43.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.1e-167 595.1 910 44.8
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-167 594.7 932 42.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.9e-167 594.3 914 44.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.5e-167 594.0 974 43.9
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.1e-166 590.9 963 42.4
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.1e-166 590.9 881 44.6
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.8e-166 590.5 932 42.7
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 3.6e-166 590.1 852 46.5
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 4.7e-166 589.7 957 43.6
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.0e-165 586.6 944 43.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.2e-165 586.3 958 44.3
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.8e-165 585.9 946 43.2
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 5.8e-164 582.8 881 45.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.4e-162 578.2 889 44.7
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 7.8e-161 572.4 917 43.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 2.3e-160 570.9 974 42.9
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.9e-160 570.1 892 43.5
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 8.6e-160 568.9 900 41.9
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.9e-159 567.8 868 44.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.3e-159 567.0 910 43.7
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 4.3e-159 566.6 910 44.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 5.6e-159 566.2 957 42.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.8e-158 563.9 907 42.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 8.1e-158 562.4 850 43.2
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.4e-157 561.6 891 42.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 6.8e-157 559.3 899 41.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.6e-156 557.4 889 43.3
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.6e-156 555.8 892 42.4
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.3e-155 555.1 961 41.1
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-155 554.7 840 43.9
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 8.4e-155 552.4 920 41.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.1e-154 552.0 895 42.1
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.2e-154 550.1 931 44.9
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 4.2e-154 550.1 843 43.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.6e-153 546.6 901 42.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.6e-153 546.6 938 42.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.0e-153 546.2 917 41.1
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.3e-152 545.0 932 41.8
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.3e-152 545.0 892 42.6
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.3e-152 545.0 926 44.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 5.1e-152 543.1 864 42.6
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.7e-152 542.3 881 43.0
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.1e-151 542.0 907 42.9
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.3e-151 540.4 917 40.6
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.3e-151 540.4 861 43.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-151 540.0 919 40.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.8e-150 537.3 747 48.3
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.8e-150 536.6 910 44.1
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.2e-150 536.2 902 42.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.5e-148 531.6 856 42.8
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 3.4e-148 530.4 873 43.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 6.4e-147 526.2 931 40.5
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.2e-146 523.5 811 47.2
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 7.1e-146 522.7 878 43.3
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.7e-145 520.8 890 41.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.3e-143 513.8 654 50.2
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 7.3e-143 512.7 920 40.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.8e-142 510.0 722 45.8
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.3e-141 506.5 909 40.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.9e-139 500.0 903 39.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.2e-138 496.9 850 40.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.4e-138 496.5 977 39.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.2e-137 495.4 1040 37.4
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.6e-137 493.4 853 40.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.0e-137 493.0 937 38.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.0e-136 492.3 861 40.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.1e-135 488.8 914 40.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.0e-133 479.2 747 43.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-132 476.9 889 39.0
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.0e-131 475.7 863 40.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.9e-131 474.2 887 39.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 4.9e-131 473.4 965 38.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.3e-127 460.7 851 41.1
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.8e-126 456.8 866 39.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 5.3e-125 453.4 901 37.3
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.4e-124 450.7 851 37.7
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 3.4e-124 450.7 917 37.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 6.5e-123 446.4 959 37.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.4e-123 446.0 703 45.8
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 5.5e-122 443.4 849 37.5
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.1e-121 441.4 1010 34.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.7e-121 441.0 916 37.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.6e-121 440.3 883 38.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.9e-120 437.2 837 37.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 9.7e-119 432.6 918 35.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 9.7e-119 432.6 918 35.8
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.8e-118 430.3 920 37.5
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 8.2e-118 429.5 846 38.1
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.1e-117 429.1 846 38.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.1e-117 429.1 874 38.9
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 4.1e-117 427.2 854 37.7
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 9.0e-117 426.0 911 37.2
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 9.0e-117 426.0 908 36.1
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.0e-116 424.9 851 37.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.3e-115 422.2 930 37.7
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.2e-115 421.4 948 37.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-115 421.0 712 41.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.4e-112 412.1 582 46.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 5.7e-111 406.8 836 36.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.2e-110 404.8 910 34.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-109 402.5 826 36.1
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.8e-109 401.7 940 34.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.8e-109 401.7 889 37.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 5.3e-109 400.2 759 39.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.0e-108 398.3 835 35.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.9e-108 396.7 844 35.9
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.5e-107 392.9 888 35.5
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.9e-106 391.7 1027 35.7
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.0e-103 381.7 858 35.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-100 372.5 1036 32.8
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.0e-99 369.4 581 41.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-98 365.5 814 34.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.2e-98 364.4 761 37.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-96 359.4 789 36.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.5e-92 344.4 631 39.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 2.1e-89 335.1 451 46.6
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-87 328.6 678 38.6
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.5e-84 317.8 485 44.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 3.0e-72 278.1 582 39.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.7e-70 272.3 953 28.9
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.8e-69 268.9 415 44.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.5e-66 259.2 768 32.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.5e-66 256.5 385 43.4
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-63 248.8 349 46.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.2e-60 239.6 263 53.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 6.6e-59 233.8 390 41.8
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.6e-59 233.8 580 33.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.2e-41 176.4 426 35.4
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-40 172.9 208 51.0
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.4e-40 172.9 281 43.4
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.9e-38 165.2 254 42.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 4.2e-37 161.4 676 26.9
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.7e-36 158.7 353 37.7
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 7.8e-36 157.1 250 44.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 5.3e-32 144.4 111 61.3
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.3e-29 133.7 185 44.3
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.9e-28 130.6 243 38.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.6e-23 115.5 141 45.4
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.3e-22 113.2 138 47.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-22 112.1 258 34.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 7.9e-20 104.0 122 48.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.9e-19 101.7 132 42.4
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-13 82.4 95 47.4
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 4.6e-12 78.2 164 32.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-10 72.8 53 56.6
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.8e-09 68.9 117 40.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.3e-09 67.8 120 41.7
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.3e-09 67.8 122 36.1
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.4e-08 65.9 41 58.5
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.3e-08 64.7 113 37.2


User provided reference genes

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