Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 3.3e-254 882.1 824 100.0
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.5e-65 255.4 326 47.2
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.6e-62 245.4 335 53.7
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.6e-62 245.4 335 53.7
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.7e-61 241.9 386 52.1
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.9e-60 238.4 319 54.9
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 9.6e-60 236.1 379 48.8
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.6e-59 235.3 321 54.5
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.6e-59 235.3 319 54.9
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 8.1e-59 233.0 381 49.9
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.1e-58 232.6 308 56.2
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.8e-58 231.9 335 52.2
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 8.9e-58 229.6 320 54.1
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 5.8e-57 226.9 358 49.2
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 1.7e-56 225.3 377 49.3
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.7e-54 218.0 326 54.9
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 8.7e-53 213.0 317 53.3
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.5e-52 211.5 320 53.8
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 4.8e-51 207.2 307 55.4
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 2.0e-49 201.8 305 54.4
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 3.4e-49 201.1 305 54.1
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 4.4e-49 200.7 307 54.4
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 4.4e-49 200.7 307 54.4
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 9.9e-49 199.5 305 54.1
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.3e-48 199.1 313 54.0
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 6.4e-48 196.8 332 49.7
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.4e-47 194.9 299 54.8
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 7.1e-47 193.4 288 54.2
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.3e-45 188.3 305 52.8
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 8.7e-45 186.4 290 47.6
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-43 182.6 298 46.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 5.3e-42 177.2 295 51.5
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 5.3e-42 177.2 296 52.0
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.0e-41 175.3 263 56.3
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.8e-40 171.0 294 51.7
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.9e-40 170.6 294 52.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.4e-39 169.1 278 54.0
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.4e-39 169.1 273 53.1
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.2e-39 167.5 287 49.8
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 7.1e-39 166.8 272 55.9
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 7.1e-39 166.8 295 51.2
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 9.3e-39 166.4 276 54.3
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 6.0e-38 163.7 258 55.0
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 7.9e-38 163.3 310 48.4
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 7.9e-38 163.3 257 55.3
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 6.7e-37 160.2 258 54.3
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 6.7e-37 160.2 309 48.9
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 8.7e-37 159.8 284 53.5
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.5e-36 159.1 252 57.5
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.9e-36 158.7 308 42.9
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 3.3e-36 157.9 293 52.2
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 9.6e-36 156.4 324 46.0
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 1.3e-35 156.0 219 64.4
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.3e-35 156.0 243 53.9
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.1e-35 155.2 303 47.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.8e-35 154.8 297 48.1
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 3.7e-35 154.5 296 50.3
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 6.2e-35 153.7 239 51.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 6.2e-35 153.7 315 43.5
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 6.2e-35 153.7 256 54.7
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 6.2e-35 153.7 291 50.2
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.1e-34 152.9 260 54.2
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.1e-34 152.9 305 38.7
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 3.1e-34 151.4 278 48.9
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 3.1e-34 151.4 291 49.8
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 4.0e-34 151.0 291 49.8
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 4.0e-34 151.0 312 41.7
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 6.9e-34 150.2 257 54.9
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.6e-33 148.3 299 45.8
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 5.8e-33 147.1 272 51.8
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.7e-32 145.6 117 59.0
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.7e-32 145.6 288 48.3
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.9e-32 144.8 261 52.9
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 4.9e-32 144.1 257 52.5
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 4.9e-32 144.1 295 47.5
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 6.5e-32 143.7 258 50.4
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.5e-31 141.7 278 51.1
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.5e-31 141.7 345 43.8
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 5.5e-31 140.6 257 50.6
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 5.5e-31 140.6 217 61.8
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 7.1e-31 140.2 297 34.0
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.2e-30 139.4 217 62.2
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.6e-30 139.0 256 50.8
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.6e-30 139.0 246 52.8
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 3.0e-29 134.8 257 53.3
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.0e-29 134.8 222 57.2
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 3.0e-29 134.8 293 50.2
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 7.4e-28 130.2 219 56.2
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 3.7e-27 127.9 228 54.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 6.2e-27 127.1 275 29.5
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 1.1e-26 126.3 221 53.8
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.4e-26 125.9 217 58.5
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 6.9e-26 123.6 233 53.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 3.8e-24 117.9 290 46.9
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.9e-23 115.5 290 46.6
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 4.2e-23 114.4 258 46.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 9.3e-23 113.2 221 50.7
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 4.6e-22 110.9 134 43.3
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 6.1e-22 110.5 278 46.0
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 8.7e-21 106.7 108 50.0
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.1e-20 106.3 146 37.7
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 5.7e-20 104.0 95 53.7
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.6e-19 102.4 245 43.7
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.2e-11 75.5 133 36.1
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.8e-11 75.1 61 52.5
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.8e-11 75.1 61 52.5
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 5.3e-10 70.9 58 56.9
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 6.9e-10 70.5 45 66.7
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 3.4e-09 68.2 104 35.6
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.2e-08 65.5 58 51.7
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 5.5e-07 60.8 107 38.3
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 7.9e-06 57.0 166 24.1


User provided reference genes

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